fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G30130 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)

>AT2G30130.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AfeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstEII, BstXI, Bsu36I, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PspOMI, PstI, PvuII, RsrII, SacI, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SpeI, StuI, TliI, Tth111I, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 6266
AccI GT|[AC][TG]AC 553, 1240, 4446, 4710, 5895, 5924, 6255, 6263
AccII(FnuDII) CG|CG 3513, 4659, 5399, 6114
AciI C|CGC 5398, 6448
AflII C|TTAAG 3159, 5028, 6378
AflIII A|CPuPyGT 522, 557, 935, 2749, 3077, 3918, 5743, 6115, 6251, 6286
AgeI A|CCGGT 4082, 6259
AluI AG|CT 101, 152, 282, 1077, 1213, 4035, 4145, 4634, 4653, 4757, 4869, 5159, 5439, 5451, 5737, 6542
ApoI Pu|AATTPy 170, 354, 861, 924, 1009, 1131, 1619, 2042, 2181, 2241, 4215, 5483, 5854, 5904, 5981, 6174, 6481, 6503
AseI AT|TAAT 31, 67, 249, 318, 731, 1631, 1917, 2451, 3874, 5074, 5729, 6355, 6457
AvaI C|PyCGPuG 2386
AvaII G|G[AT]CC 2567, 4115, 4337
BamHI G|GATCC 3660
BanI G|GPyPuCC 2055, 4242
BclI T|GATCA 1368, 5889
BfaI C|TAG 1456, 1992, 2733, 2877, 3942, 4771, 4852, 5449
BglII A|GATCT 3259, 5215, 5302
BsaAI PyAC|GTPu 523, 681, 749, 1243, 1421, 2201, 6252, 6285
BsaBI GATNN|NNATC 2331
BsaHI GPu|CGPyC 3500, 6266
BsaJI C|CNNGG 95, 2114
BsaWI [AT]|CCGG[AT] 4082, 4706, 6259
BsiEI CGPuPy|CG 5713, 6557
BsiHKAI G[AT]GC[AT]|C 3527, 6275
BslI CCNNNNN|NNGG 765, 2576, 3656, 4712
BsoBI C|PyCGPuG 2386
Bsp1286I G[GAT]GC[CAT]|C 3527, 6275
BspDI AT|CGAT 5959, 6559
BspHI T|CATGA 1394, 3232
BspT107I(HgiCI) G|G[TC][AG]CC 2055, 4242
BsrFI Pu|CCGGPy 4082, 6259
BsrGI T|GTACA 3628
BsrI ACTGGN| 698, 5210
BssKI |CCNGG 1105, 1154, 4118
BstBI TT|CGAA 400
BstF5I GGATGNN| 2770
BstNI CC|[AT]GG 1154
BstUI CG|CG 3513, 4659, 5399, 6114
BstYI Pu|GATCPy 295, 3259, 3660, 4703, 5215, 5302
BstZ17I GTA|TAC 1240, 4446
BtgI C|CPuPyGG 2114
BtrI CAC|GTC 2585
BtsI GCAGTGNN| 4778
Cac8I GCN|NGC 4245, 5170
Cfr10I [AG]|CCGG[TC] 4082, 6259
ClaI AT|CGAT 5959, 6559
DdeI C|TNAG 51, 2187, 2252, 3182, 3642, 3817, 4003, 5467, 5509
DpnI GA-CH3|TC 294, 389, 422, 1292, 1367, 1772, 1831, 3011, 3185, 3225, 3258, 3659, 4094, 4121, 4204, 4702, 5214, 5301, 5888, 5960, 6025, 6556, 6560
DpnII |GATC 294, 389, 422, 1292, 1367, 1772, 1831, 3011, 3185, 3225, 3258, 3659, 4094, 4121, 4204, 4702, 5214, 5301, 5888, 5960, 6025, 6556, 6560
DraI TTT|AAA 871, 945, 966, 2296, 2432, 3351, 3689, 3860, 4430, 4620, 5499
DraIII CACNNN|GTG 4132
EcoRI G|AATTC 170, 1131, 2241, 6503
Fnu4HI GC|NGC 1193, 4716, 4756, 4983, 5398, 6448
HaeII PuGCGC|Py 2731
HaeIII GG|CC 1085, 2388, 2545
HhaI GCG|C 2730, 3514, 6493
HinP1I G|CGC 2730, 3514, 6493
HincII GTPy|PuAC 1875, 3073, 5924
HindIII A|AGCTT 153, 1214, 4146, 5160
HinfI G|ANTC 159, 234, 367, 1501, 2269, 2307, 2560, 2912, 3169, 3382, 3457, 3646, 3702, 4564, 4792, 5036, 5545, 5674, 5693, 5936, 6373
HpaI GTT|AAC 1875, 3073
HpaII C|CGG 1104, 4081, 4118, 4705, 6258
Hpy188I TCN|GA 242, 292, 1253, 2076, 2207, 3181, 3496, 4567, 4762, 4804, 5468
Hpy99I CG[AT]CG| 1251, 4154
HpyCH4III ACN|GT 23, 639, 1144, 1373, 1474, 1527, 3237, 3423, 3671, 4828, 4954, 5289, 5768, 6052
HpyCH4IV A|CGT 522, 680, 748, 1242, 1249, 1420, 1560, 1599, 2200, 2537, 2584, 3075, 3470, 3592, 3604, 4250, 5743, 6251, 6265, 6284
HpyCH4V TG|CA 313, 409, 1164, 1971, 3248, 3491, 3694, 4164, 4174, 4265, 4766, 4798, 4808, 4903, 4991, 4997, 5003, 5009, 5015, 5167, 5171, 5519, 5637, 6281
MboI |GATC 294, 389, 422, 1292, 1367, 1772, 1831, 3011, 3185, 3225, 3258, 3659, 4094, 4121, 4204, 4702, 5214, 5301, 5888, 5960, 6025, 6556, 6560
MfeI C|AATTG 2099
MluI A|CGCGT 6115
MseI T|TAA 30, 66, 176, 229, 248, 263, 317, 346, 350, 375, 432, 475, 613, 670, 715, 730, 826, 863, 870, 930, 944, 965, 1296, 1307, 1319, 1350, 1406, 1563, 1630, 1693, 1706, 1723, 1874, 1916, 2021, 2038, 2083, 2087, 2140, 2295, 2343, 2360, 2431, 2450, 2454, 2664, 2780, 2888, 3042, 3072, 3158, 3350, 3367, 3439, 3620, 3654, 3688, 3715, 3720, 3843, 3859, 3865, 3873, 3894, 3906, 3996, 4058, 4429, 4457, 4514, 4619, 5027, 5049, 5073, 5162, 5244, 5409, 5488, 5498, 5607, 5728, 5789, 5808, 5822, 5971, 5983, 6009, 6105, 6128, 6167, 6216, 6329, 6354, 6358, 6377, 6415, 6452, 6456, 6518
MslI CAPyNN|NNPuTG 3252, 3582, 4130, 4806, 5175, 6234, 6285
MspI C|CGG 1104, 4081, 4118, 4705, 6258
MwoI GCNNNNN|NNGC 2232, 3499, 4034, 4254, 4765, 4816
N.BstNBI GAGTCNNNN|N 2312, 2565, 3462, 6378
NciI CC|[CG]GG 1105, 4118
NcoI C|CATGG 2114
NdeI CA|TATG 1443, 2898, 4357, 6069
NlaIII CATG| 162, 411, 556, 598, 934, 1235, 1393, 2113, 2376, 2748, 3122, 3231, 3246, 3250, 3582, 3917, 4130, 4325, 4610, 4941, 5169, 5173, 5517, 5590, 5670, 5883, 5927, 5963, 6228, 6270, 6279, 6310, 6577
NlaIV GGN|NCC 91, 1179, 2055, 3660, 4116, 4242, 4271
NsiI ATGCA|T 410, 3249, 3492, 5168
NspI PuCATG|Py 412, 557, 935, 2749, 3251, 3918, 5170, 5518, 5591, 6229
PacI TTAAT|TAA 350, 2087, 2454, 6358, 6456
PciI A|CATGT 557, 935, 2749, 3918
PmlI CAC|GTG 6285
PsiI TTA|TAA 2925, 3048, 3772, 3879, 3966, 6048, 6350, 6397
PspGI |CC[AT]GG 1154
PvuI CGAT|CG 6557
RsaI GT|AC 694, 1418, 1476, 3417, 3627, 3673, 4843, 5206, 5779
SalI G|TCGAC 5924
Sau3AI |GATC 294, 389, 422, 1292, 1367, 1772, 1831, 3011, 3185, 3225, 3258, 3659, 4094, 4121, 4204, 4702, 5214, 5301, 5888, 5960, 6025, 6556, 6560
Sau96I G|GNCC 2388, 2567, 4115, 4337
ScaI AGT|ACT 695, 4844, 5207
ScrFI CC|NGG 1105, 1154, 4118
SfcI C|TPuPyAG 2601, 5561
SmlI C|TPyPuAG 201, 386, 1211, 3159, 4039, 4783, 5028, 5632, 6378
SnaBI TAC|GTA 681, 749, 1421, 2201
SphI GCATG|C 5170
SspI AAT|ATT 957, 1046, 1658, 1765, 1824, 5914
StyI C|C[AT][AT]GG 95, 2114
SwaI ATTT|AAAT 3690, 4621
Taqƒ¿I T|CGA 399, 420, 2237, 3013, 3223, 3336, 3375, 3384, 4152, 5080, 5612, 5710, 5923, 5938, 5958, 6558
TfiI G|A[AT]TC 234, 367, 1501, 2269, 2912, 3169, 3646, 3702, 4564, 4792, 5036, 5545, 5674, 5936
TseI G|C[AT]GC 1193, 4716, 4756, 4983
Tsp45I |GT[CG]AC 1172, 2805, 4627
Tsp509I |AATT 28, 32, 45, 64, 68, 169, 250, 278, 319, 348, 353, 544, 593, 621, 824, 860, 865, 882, 923, 1008, 1064, 1072, 1130, 1354, 1379, 1565, 1618, 1632, 1914, 2041, 2069, 2085, 2098, 2180, 2240, 2328, 2345, 2452, 2572, 2666, 2782, 2809, 2873, 2930, 3044, 3065, 3284, 3347, 3652, 3691, 3763, 3875, 3892, 3904, 4214, 4516, 4571, 4622, 5071, 5246, 5296, 5306, 5316, 5407, 5482, 5528, 5549, 5605, 5687, 5810, 5820, 5853, 5903, 5973, 5980, 5985, 6079, 6130, 6173, 6194, 6211, 6322, 6331, 6352, 6356, 6454, 6458, 6480, 6502, 6536
TspRI NNCA[CG]TGNN| 2368, 3672, 4401, 4778, 5292
XbaI T|CTAGA 2878, 3943
XcmI CCANNNNN|NNNNTGG 2564
XmnI GAANN|NNTTC 196, 239, 594, 3951


Click here to view TAIR data

>AT2G30130 genomic sequence (4110-4271,4635-5054,) length:6594
ctaatggaaa atgtaaagta gaaactgtaa attaattagt gagataaatt 
50
acttagtaaa aatgaaatta attagtgaga taaataagaa ggagccaagg 
100
aaagctatga gagtaaaaga gagaagtttc acttgggaaa gagtggatta 
150
gaaagcttgg actcatgtgg aattcattta atgtgatggt tgaaacattt 
200
cttgaggctt ttatcaaaac accatttatt ttaagaatct cttcagacat 
250
taattagggt tttcttaaaa aaacactcta attagctttg tgtcggatct 
300
cgttttgtgg gtcttgcatt aatttcctct ggatttatgt tgttatttta 
350
attaaattca cacaatggat tcttacttaa tccctctcaa gatcaatagt 
400
tcgaaagtga tgcatgtatc ttcgatctcc tcattaagta tgggtaatct 
450
tgttatgatt tatccacgcc ttctttttaa tatatatata tatatatata 
500
tatatatata tatatatatt tacacgtata taaatactaa aatagaatta 
550
tggtagacat gtatatattt gagaaactac aaaatatgtg aaccaattcc 
600
atgatagtct aaacttaaca aaaattatca aaaacaaaaa cggtatagtg 
650
attgtcaaat cgtcatattg gttaagacta tacgtatgtg ttttagtact 
700
ggctattgta gaagtgttaa atatactttg attaatatgt gttttagtta 
750
cgtatttacc cgtttattgg aaaccaaaaa caagatatgt gagttgtgct 
800
atgtaagatt gataaaaaaa aaaaaaatta aagattgata aatatacaca 
850
agacttcttt gaatttaatt tttaaaaaaa ctcaattctt ttttttggta 
900
gggaaaaaaa aaacaaaaga ataaaattct tttaacatgt atattttaaa 
950
taaaagaata ttgtttttaa aagaaatggt tagtttctat ttgctctaac 
1000
cagaaatgga attttctttt gttggaaaat gaataacatc agcagaatat 
1050
tgtggatttt actcaaatta tataattcag cttattggcc ttgctaatgc 
1100
tacttccggg tgggcatcca agacaagatt gaattcattg tcaaaccgtt 
1150
ccagccaggc atccgtgcag gtgtcacagg ttcctcctga aaggctgctc 
1200
tctcctcttt ctcaagcttc atagcatatt gtttttcatg tatacgtgat 
1250
acgtcggata ataaaaatat aagtgaacag atatattcac aatgatctta 
1300
aagagcattt aatcacaagg ttaatatata tgccgtttga aaacagcagt 
1350
attaaaattg taagatatga tcaacagtct aatttcatat ctctcatgac 
1400
aaatatctta atgcttttgg tacgtagata gacagaagaa gtcatatgaa 
1450
ggcttggcta gaaaaatcaa agcaacagta cacaaatact tgttctgttt 
1500
ggattcaaaa aggttaggtc tttgaatact gtgtaaagaa actacatcta 
1550
caactttttg gacgttaatt aggttattag gttgttcaaa acgatgttca 
1600
acgtctgtct tgttgtgcga atttttatgg attaattatt agtccatcat 
1650
ctcccataat atttatcaca ccactaaact tcacatccat attattaact 
1700
atgtcattta agtcctttgt atgtttaacg aaatccaaag ttgtagttca 
1750
ctcatacctt tcacaatatt tatgatccac tttttttttt tttttttttt 
1800
tttttttttt ttttttgtca aacaatattt atgatccact aaactctaaa 
1850
tctttattga taaatctaac aatggttaac cgaatgataa agacttccgt 
1900
gtatttatgt gagacaatta atcttgtttt caagccaatg gtaaaagcaa 
1950
gaccactttt tgactgctat cgtgcaacaa aacctatgtt ttactagaaa 
2000
tgtgtgaaac cacactcatt cgttaatgct aaataaacat taaatttatt 
2050
ttgtggtgcc aagaaaaaac aattagtctg atacttaatt aaaataaaca 
2100
attgaggcgt ttaccatggt tttgtcttac tttggtttta gttaaataag 
2150
acaagtttta tcaccaaaga tggagtttat gaattttctt agtctggctc 
2200
tacgtaatcc gataaaaaca aatgttgctt ttcacgcatc gaattcgctg 
2250
acctaagatg cttcgcagag attctgtcca gatttttgta tattctttaa 
2300
atagggggag tcggggagaa aataatgata attatcccaa gttcttaatt 
2350
cagtcccttg tttaatcagt gtcttcccat gaaaactcgg gcctccccaa 
2400
cattattatt ctcataatca ctttacaaaa gtttaaaata gtgaatgtgg 
2450
attaattaat agtataaaga ggaagtgtgt gtggaggaga gattggttga 
2500
agttttgatg tgaatgtctt tcaaggcaac aaacattcac gttggaggcc 
2550
atttccaaag gagtcttggt cctaattagg gtttcacgtc attctcactt 
2600
ctatagtgta ttatcctaac attacccact ctctctcttt tttttttttt 
2650
ttttcattct tatttttaat tacctaacca actttggttt ttcgtttttt 
2700
cattttgtgt tagaataaag tcaaatatag ggcgctagat gtttttcaac 
2750
atgtataata atataaacgg atgatatatt tttaattgtt tagggtgtag 
2800
aaaatgtgac aattattagt tttatattac acaaatatat ggtttcaaat 
2850
ctatatatat atatatatat atataattct agacatccat taaaatacat 
2900
atgttaggat tagattcata tatcttataa taattttatt ttgtgttggc 
2950
tttttctctt tttgttgtaa aatctctttt tgttttctct gttgaacgct 
3000
tctttcattt tagatcgact atattgtttt gttgattatt tttttaatta 
3050
taaatcgtta gcccaaaatt gtgttaacgt gtttttgttc ttctattata 
3100
tctataaata agttgtatga aagcatggaa cgaaactttt tgttggtttt 
3150
ctcacttcct taagtaagcg attctcaaac ttctgagatc atcaaatgag 
3200
ttcttttgta acttctaaac atactcgatc atcatgaact gtataaccat 
3250
gcatgtgtag atcttcctct tcttcaaaag tttctaatta cacaacctaa 
3300
taaatatctt tccttgtaac caccaatctc actttcctcg acttttgtaa 
3350
tttaaaaaag agagaagatt aagacatcga gagactcgaa taaataaaaa 
3400
aaagagaggt tagtaatggt acgactgtcg tgtgtatgtg ttaaagaaat 
3450
aagagaagag tcaaaaggac aacgtgggga aacttctcaa tatgcatcgg 
3500
acgccaacct atcacgcgcc tttgcggtgc tcacttctac atcttcttct 
3550
tctcctaact tactatattg ccctcaacat tctcatggtc aaaacgtcat 
3600
taccaacgtc ttttttagcc gttaatatgt acatatcccg tcctaagaat 
3650
ccaaattaag gatccatata cactgtactt ttgaactatt taaattgcat 
3700
aagattcaaa caagacttaa cttaaaatga catctatttt gaagattttt 
3750
ttttctaaaa tgataattat tttataacga aaagaataca actttgtggt 
3800
gagaagaaca agaaaaacta agaataggtg ttttcatatt taggttaaat 
3850
aataaaacat ttaaagttaa gacattaatt ataacacaca aaaaattaaa 
3900
gttggaatta aatgaacaca tgtgaacacc aacctcgctc tctctagaaa 
3950
gccttcaaaa ccctattata aatacacacc tctcaaactc tctcccttta 
4000
actctaagtt tttctttctt ctttctctgc tctcaaagct caagagaact 
4050
ctatccttat taacttacaa ggataactaa aaccggtgta atcacgatca 
4100
tagtagaagA TGGGCGGTCC CGGATCATCA CCATGTGCTT CGTGTAAGCT 
4150
TCTTCGACGA CGATGTGCAA AAGATTGCAT CTTCGCACCT TATTTTCCTC 
4200
CTGACGATCC TCACAAATTC GCCATTGTTC ATAAGGTCTT TGGTGCCAGC 
4250
AACGTCAGCA AAATGTTGCA Ggttccatct ccttctcatt tccccataac 
4300
tatatgctat atattggttt ttcttccatg atattttggt ccgttgaaat 
4350
cccttccata tgctttctat ttttatccat atctctcttc caaaacattc 
4400
agtgtgtgtt tggtcaagta tcaaacttct ttaaacattt gtatagtata 
4450
catacacatt aaaaataaac atatttcact ccaacaaccc ttattcactt 
4500
tcatattatt tattcttaat tagttgatta gttatgcttg ataaactact 
4550
atatggacat atatgaatca gaaattgtgc tacaaaatat gttctatata 
4600
gaaaatgttt acatgattat ttaaattgtc acagGAGCTA CCAGTTCATC 
4650
AAAGAGCTGA CGCGGTGAAT AGTCTGGTTT TTGAAGCAAA CGCAAGAGTA 
4700
AGAGATCCGG TCTACGGCTG CGTAGGAGCA ATCTCCTACT TACAAAACCA 
4750
AGTCTCGCAG CTTCAGATGC AACTAGCAGT GGCTCAAGCC GAGATTCTTT 
4800
GCATTCAGAT GCAAAATGAG CCAACCTTAC AGTCTCATCA TCAAGTACTT 
4850
GAACTAGACC AAGACCACAA AGCTCTCTTA CTAAACAACA ACAACATCAA 
4900
TAACTGCAAC ACCAACAACA ACAATAACAA CTTTGGTTAT GCCATGTCTT 
4950
CTGGACAGTT CAACTCTAAC TTTGCCTCAC CAAGCAGCAT AATGCAAATG 
5000
CAGATGCAAA TGCAAATGCA AGACCCTCTT AAGCAAGAAT CTCTTTGGAC 
5050
TTAAtgtaat aataataata ataattaatg ttcgacaagt ttgctacttg 
5100
gttatgttga aaaagagaat atgggaacag gtttcgtgta aggaaagtag 
5150
tataagtcaa agcttaaatg catgcatgtg atggtgatga gatgtagtta 
5200
tgctttagta ctggagatct gttttttttt tttctttttc tctctttaat 
5250
ttggtttctc acttccattt ttcttttacc atcgtttgaa cagtgaaaat 
5300
tagatctaat tcaatccaat ttttttgtaa tatgaagtcg ccaagacatt 
5350
gctctctaac cactacacac tttttctcaa acaaaccgac acaactttgc 
5400
cgcgttcaaa ttaagagaca tttagattgt cttatggaat agctaaaaga 
5450
ctagctaaac tcaaaatctc agatatacaa aaaaatttat taaacttatt 
5500
taaagtagtc ttagaaaaca tgcaaaagca atttttcttt ttatggaatc 
5550
aattatttta ctatagacta aaaaagtaga ttgtatttct acatgcgata 
5600
aactgaaatt aaatcgaata gaaaaataaa cctcaagttg caaactacat 
5650
tttattcaaa aagaaaatct acatgattca acctttacaa tttgactcac 
5700
aatagattta ttcgaccgac ctgatttgat taatcataag ctacacgtta 
5750
gaacacaaag tcgcctctac tgttgctttt gtactaatcc ttaaaaaaat 
5800
catatagatt taattcacca aaattaagtt aggaaagaag aggtggtggt 
5850
gttgaatttg attatgttat ctattgatag tattcatgtg atcagtagac 
5900
gaaaaatttt caaaatattg cctgtcgaca tgggaagaat cgaatgacta 
5950
aaaaaataat cgatcatgtt ctttaatttc aaatttaatt atatatctat 
6000
ataaataccc ttaacttgtt tttgacgatc ctaccaagcc agagaactta 
6050
taactgtcat attcatacca tatgctatat aattagtggg atataatact 
6100
ctatctttaa ctttacgcgt aacaactttt taattaggat ttaggaataa 
6150
gaacctttct tttgtttgtt aaaaaattct ttctctttct ctctcaattt 
6200
tttcactata taaattatta agttagacgc atgtatatgt ctttttacta 
6250
acacgtagac cggtagacgt ccatgtgctc catgcacgtg tgtaaataca 
6300
tctttttttg ccatgtgtga actaattttt ttaatttgcc aagccaaagt 
6350
tataattaat taaatagcag aaagagtctt aagagaaata atatgattat 
6400
aatggcagaa gaaaagttaa gatttacaga tacatccaat agtgtatagc 
6450
cgcttaatta atttatccac acctcaacga aaatttccgt tggtgcgcta 
6500
acgaattcag gctgtgaagt taaaagaaaa taaacaaaat tatagcttca 
6550
cataagcgat cgatcttcaa actctacaca tgacagaagc aaat
6600