fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G32370 HDG3 homeodomain GLABROUS 3 (.1)

>AT2G32370.1 CDS map

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Uncut enzymes: AatII, AccIII(BspMII), AclI, AflII, AgeI, AhdI, AlwI, ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BsrFI, BsrGI, BssHII, BstAPI, BstEII, BstZ17I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoRI, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, StuI, SwaI, XbaI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 18
AccI GT|[AC][TG]AC 1431, 1560
AccII(FnuDII) CG|CG 1127
AciI C|CGC 1112, 1126, 1144, 1234, 1378
AfeI AGC|GCT 304
AflIII A|CPuPyGT 1302
AluI AG|CT 187, 250, 451, 777, 836, 841, 1133, 1363, 1507, 1882, 2096
AlwNI CAGNNN|CTG 2075
Aor51HI(Eco47III) AGC|GCT 304
ApoI Pu|AATTPy 337, 657
AseI AT|TAAT 1347
AvaI C|PyCGPuG 702
AvaII G|G[AT]CC 320, 717, 888, 2073
BanI G|GPyPuCC 18
BanII GPuGCPy|C 778
BclI T|GATCA 1461
BfaI C|TAG 834, 891, 1115, 1419, 1833, 2082
BlpI GC|TNAGC 840, 1511
BsaJI C|CNNGG 770, 914, 923, 1283, 1482, 1938
BsaWI [AT]|CCGG[AT] 1456
BsiHKAI G[AT]GC[AT]|C 520, 778
BslI CCNNNNN|NNGG 480, 704, 897, 1712, 2060, 2140
BsoBI C|PyCGPuG 702
Bsp1286I G[GAT]GC[CAT]|C 520, 778
BspHI T|CATGA 1032
BspT107I(HgiCI) G|G[TC][AG]CC 18
BsrBI GAG|CGG 1411, 1513
BsrDI GCAATGNN| 945
BsrI ACTGGN| 715, 955, 1357
BssKI |CCNGG 922, 1024, 1626, 1638, 2013
BssSI C|TCGTG 937
BstBI TT|CGAA 514, 908
BstF5I GGATGNN| 672, 816, 856, 1250, 1738
BstNI CC|[AT]GG 922, 1024, 1626, 2013
BstUI CG|CG 1127
BstXI CCANNNNN|NTGG 1944
BstYI Pu|GATCPy 676
Bsu36I CC|TNAGG 424, 2078
BtgI C|CPuPyGG 770, 1482, 1938
Cac8I GCN|NGC 1496
DdeI C|TNAG 4, 300, 395, 423, 475, 679, 839, 1093, 1510, 1707, 2077, 2088, 2113
DpnI GA-CH3|TC 122, 331, 559, 675, 742, 1460, 1622, 1949, 1966, 2031, 2143
DpnII |GATC 122, 331, 559, 675, 742, 1460, 1622, 1949, 1966, 2031, 2143
EcoNI CCTNN|NNNAGG 1712
EcoO109I PuG|GNCCPy 2074
EcoRV GAT|ATC 591, 1416, 1591
Fnu4HI GC|NGC 1053, 1234, 1371, 1656
HaeII PuGCGC|Py 304
HaeIII GG|CC 485
HhaI GCG|C 303, 1901
HinP1I G|CGC 303, 1901
HincII GTPy|PuAC 993, 1431
HindIII A|AGCTT 251, 1364
HinfI G|ANTC 114, 371, 407, 983, 1028, 1256, 1452, 2067, 2117, 2123
HpaII C|CGG 1005, 1455, 1638, 1819
Hpy188I TCN|GA 233, 240, 259, 329, 396, 404, 410, 429, 691, 1253, 1594, 1708, 2120, 2165
Hpy99I CG[AT]CG| 1552
HpyCH4III ACN|GT 136, 809, 1150, 1692, 1804, 2133
HpyCH4IV A|CGT 869
HpyCH4V TG|CA 493, 721, 931, 975, 1266, 1318, 1654, 1745, 1761, 1807, 2104
KpnI GGTAC|C 18
MboI |GATC 122, 331, 559, 675, 742, 1460, 1622, 1949, 1966, 2031, 2143
MfeI C|AATTG 310, 497, 1731
MseI T|TAA 825, 1346
MslI CAPyNN|NNPuTG 278, 629, 1943
MspA1I C[AC]G|C[GT]G 439, 581, 1380
MspI C|CGG 1005, 1455, 1638, 1819
MwoI GCNNNNN|NNGC 765, 798, 939, 1053, 1112, 1371, 1901
N.BstNBI GAGTCNNNN|N 2072
NciI CC|[CG]GG 1638
NcoI C|CATGG 770, 1482, 1938
NlaIII CATG| 13, 161, 748, 769, 973, 1031, 1290, 1301, 1481, 1495, 1823, 1937
NlaIV GGN|NCC 18, 321, 344, 620, 766
NsiI ATGCA|T 1267
NspI PuCATG|Py 1302, 1496
PaeR7I C|TCGAG 702
PciI A|CATGT 1302
PflFI GACN|NNGTC 1557
PflMI CCANNNN|NTGG 2060
PpuMI PuG|G[AT]CCPy 2074
PspGI |CC[AT]GG 922, 1024, 1626, 2013
PstI CTGCA|G 722
RsaI GT|AC 17, 292, 1096, 1353, 1389, 1397, 2001, 2127
SacI GAGCT|C 778
SalI G|TCGAC 1431
Sau3AI |GATC 122, 331, 559, 675, 742, 1460, 1622, 1949, 1966, 2031, 2143
Sau96I G|GNCC 320, 717, 888, 2073
ScrFI CC|NGG 922, 1024, 1626, 1638, 2013
SfcI C|TPuPyAG 722
SmlI C|TPyPuAG 150, 702, 794
SphI GCATG|C 1496
SspI AAT|ATT 1566
StyI C|C[AT][AT]GG 770, 1283, 1482, 1938
Taqƒ¿I T|CGA 132, 513, 660, 701, 907, 1185, 1197, 1430, 1449
TfiI G|A[AT]TC 114, 371, 407, 983, 1256, 1452, 2117, 2123
TliI C|TCGAG 702
TseI G|C[AT]GC 1053, 1371, 1656
Tsp45I |GT[CG]AC 220, 576, 1119
Tsp509I |AATT 309, 336, 496, 656, 1009, 1344, 1730
TspRI NNCA[CG]TGNN| 24, 139, 715, 810, 1406, 1693
Tth111I GACN|NNGTC 1557
XcmI CCANNNNN|NNNNTGG 498
XhoI C|TCGAG 702
XmnI GAANN|NNTTC 114, 455


Click here to view TAIR data

>AT2G32370.1 length:2178
ATGTCTCAGT CAAACATGGT ACCAGTGGCT AACAACGGAG ACAACAACAA 
50
CGACAACGAA AACAACAACA ACAACAACAA CAATGGTGGA ACTGACAACA 
100
CTAATGCTGG AAATGATTCT GGAGATCAAG ATTTCGACAG TGGGAATACC 
150
TCAAGTGGCA ATCATGGAGA AGGGTTGGGA AACAATCAAG CTCCTCGTCA 
200
TAAGAAGAAA AAATACAATC GTCACACCCA ACTTCAGATT TCGGAGATGG 
250
AAGCTTTCTT CAGAGAGTGT CCTCACCCAG ATGACAAACA AAGGTACGAC 
300
CTTAGCGCTC AATTGGGATT GGACCCTGTT CAGATCAAAT TCTGGTTCCA 
350
GAACAAACGC ACTCAAAACA AGAATCAACA AGAACGCTTT GAGAACTCAG 
400
AACTTCGGAA TCTGAACAAC CACCTTAGGT CTGAAAATCA GCGGTTACGA 
450
GAAGCTATTC ATCAAGCCTT ATGCCCTAAG TGTGGAGGCC AAACTGCAAT 
500
TGGCGAAATG ACCTTCGAAG AGCACCATCT TCGCATCCTC AACGCTCGTT 
550
TGACTGAAGA GATCAAGCAA CTTTCCGTGA CAGCGGAAAA GATATCAAGG 
600
CTTACGGGGA TACCAGTAAG GAGCCATCCC CGTGTGTCTC CTCCTAATCC 
650
TCCTCCAAAT TTCGAGTTCG GGATGGGATC TAAGGGAAAT GTCGGAAACC 
700
ACTCGAGGGA AACCACTGGA CCTGCAGATG CTAATACCAA GCCGATCATC 
750
ATGGAGTTGG CATTTGGAGC CATGGAGGAG CTCTTGGTGA TGGCTCAAGT 
800
GGCTGAACCA CTGTGGATGG GAGGATTTAA TGGCACTAGC TTAGCTTTGA 
850
ACTTGGATGA ATACGAAAAG ACGTTTCGCA CGGGTCTCGG TCCTAGACTT 
900
GGCGGGTTTC GAACCGAGGC ATCCAGGGAA ACTGCACTCG TGGCAATGTG 
950
TCCTACTGGC ATTGTTGAAA TGCTCATGCA AGAGAATCTG TGGTCAACAA 
1000
TGTTTGCCGG AATTGTTGGT AGAGCCAGGA CTCATGAACA GATAATGGCT 
1050
GATGCTGCTG GAAACTTCAA TGGAAATCTC CAAATAATGA GTGCTGAGTA 
1100
CCAAGTGCTT TCCCCGCTAG TCACAACCCG CGAAAGCTAC TTCGTCCGCT 
1150
ACTGTAAGCA ACAAGGAGAG GGTTTGTGGG CGGTGGTCGA TATTTCCATC 
1200
GACCATCTCC TCCCAAACAT CAACCTAAAA TGTCGCCGCC GACCCTCTGG 
1250
ATGTCTGATT CAAGAAATGC ATAGTGGTTA CTCCAAGGTT ACATGGGTGG 
1300
AACATGTGGA AGTAGATGAT GCAGGAAGTT ACAGCATCTT TGAGAAATTA 
1350
ATCTGTACTG GTCAAGCTTT TGCTGCTAAC CGCTGGGTTG GTACATTGGT 
1400
ACGCCAGTGT GAGCGGATAT CTAGCATCTT GTCGACAGAT TTTCAATCTG 
1450
TCGATTCCGG TGATCACATA ACGCTAACTA ACCATGGAAA GATGAGCATG 
1500
CTGAAGATAG CTGAGCGGAT TGCGAGAACC TTCTTTGCTG GAATGACCAA 
1550
TGCGACGGGG TCTACAATAT TTTCTGGTGT TGAAGGAGAA GATATCAGAG 
1600
TGATGACAAT GAAGAGCGTG AATGATCCAG GAAAGCCTCC CGGTGTCATT 
1650
ATTTGTGCAG CCACTTCCTT TTGGCTTCCT GCTCCTCCTA ACACTGTCTT 
1700
TGACTTCCTC AGAGAGGCTA CTCACCGACA CAATTGGGAT GTTCTCTGCA 
1750
ACGGAGAGAT GATGCACAAG ATAGCAGAGA TTACGAATGG GATAGACAAA 
1800
AGGAACTGTG CAAGTTTACT CCGGCATGGA CACACTAGCA AGAGCAAGAT 
1850
GATGATAGTT CAAGAGACTT CTACTGACCC AACAGCTTCA TTTGTGCTTT 
1900
ATGCGCCTGT TGATATGACA TCAATGGATA TTACTCTCCA TGGAGGTGGT 
1950
GATCCTGACT TTGTGGTGAT CCTGCCTTCT GGTTTTGCTA TTTTTCCAGA 
2000
TGGTACGGGT AAGCCTGGAG GAAAAGAAGG AGGATCACTT TTGACCATTT 
2050
CCTTCCAAAT GCTGGTTGAG TCAGGTCCTG AGGCTAGGCT GAGTGTTAGC 
2100
TCTGTTGCAA CTACTGAGAA TCTGATTCGT ACAACCGTGC GGAGGATCAA 
2150
AGATTTGTTT CCTTGTCAGA CTGCTTGA
2200

>AT2G32370.1 longest ORF length:725
MSQSNMVPVA NNGDNNNDNE NNNNNNNNGG TDNTNAGNDS GDQDFDSGNT 
50
SSGNHGEGLG NNQAPRHKKK KYNRHTQLQI SEMEAFFREC PHPDDKQRYD 
100
LSAQLGLDPV QIKFWFQNKR TQNKNQQERF ENSELRNLNN HLRSENQRLR 
150
EAIHQALCPK CGGQTAIGEM TFEEHHLRIL NARLTEEIKQ LSVTAEKISR 
200
LTGIPVRSHP RVSPPNPPPN FEFGMGSKGN VGNHSRETTG PADANTKPII 
250
MELAFGAMEE LLVMAQVAEP LWMGGFNGTS LALNLDEYEK TFRTGLGPRL 
300
GGFRTEASRE TALVAMCPTG IVEMLMQENL WSTMFAGIVG RARTHEQIMA 
350
DAAGNFNGNL QIMSAEYQVL SPLVTTRESY FVRYCKQQGE GLWAVVDISI 
400
DHLLPNINLK CRRRPSGCLI QEMHSGYSKV TWVEHVEVDD AGSYSIFEKL 
450
ICTGQAFAAN RWVGTLVRQC ERISSILSTD FQSVDSGDHI TLTNHGKMSM 
500
LKIAERIART FFAGMTNATG STIFSGVEGE DIRVMTMKSV NDPGKPPGVI 
550
ICAATSFWLP APPNTVFDFL REATHRHNWD VLCNGEMMHK IAEITNGIDK 
600
RNCASLLRHG HTSKSKMMIV QETSTDPTAS FVLYAPVDMT SMDITLHGGG 
650
DPDFVVILPS GFAIFPDGTG KPGGKEGGSL LTISFQMLVE SGPEARLSVS 
700
SVATTENLIR TTVRRIKDLF PCQTA
750