fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G34140 AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1)

>AT2G34140.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DdeI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SfaNI, SfcI, SfiI, SmaI, SnaBI, SpeI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccIII(BspMII) T|CCGGA 159, 293
AciI C|CGC 89, 276, 429, 435
AclI AA|CGTT 229, 298
AluI AG|CT 390, 439
ApaLI G|TGCAC 287
AvaII G|G[AT]CC 274
BanI G|GPyPuCC 310
BsaBI GATNN|NNATC 126
BsaHI GPu|CGPyC 310
BsaWI [AT]|CCGG[AT] 159, 293, 482
BsiEI CGPuPy|CG 146, 315
BsiHKAI G[AT]GC[AT]|C 287
BslI CCNNNNN|NNGG 319, 475
Bsp1286I G[GAT]GC[CAT]|C 287
BspEI T|CCGGA 159, 293
BspT107I(HgiCI) G|G[TC][AG]CC 310
BsrFI Pu|CCGGPy 280, 313
BsrI ACTGGN| 272
BssKI |CCNGG 336
BstNI CC|[AT]GG 336
BstYI Pu|GATCPy 138
Cac8I GCN|NGC 404, 426
Cfr10I [AG]|CCGG[TC] 280, 313
DpnI GA-CH3|TC 120, 137, 166
DpnII |GATC 120, 137, 166
EaeI Py|GGCCPu 146
EagI C|GGCCG 146
Fnu4HI GC|NGC 259, 422, 429, 435, 476
HaeII PuGCGC|Py 310
HaeIII GG|CC 145
HhaI GCG|C 309
HinP1I G|CGC 309
HinfI G|ANTC 5, 12
HpaII C|CGG 92, 158, 279, 292, 312, 454, 481
Hpy188I TCN|GA 135, 140, 320, 492
Hpy99I CG[AT]CG| 305, 318, 494
HpyCH4III ACN|GT 265, 445, 496
HpyCH4IV A|CGT 228, 297
HpyCH4V TG|CA 46, 185, 286
KasI G|GCGCC 310
MboI |GATC 120, 137, 166
MseI T|TAA 24, 51, 231
MspI C|CGG 92, 158, 279, 292, 312, 454, 481
MwoI GCNNNNN|NNGC 111, 285, 435
NarI GG|CGCC 310
NlaIII CATG| 174, 193, 425, 458, 469
NlaIV GGN|NCC 310, 479
NspI PuCATG|Py 175, 426
PsiI TTA|TAA 395
PspGI |CC[AT]GG 336
Sau3AI |GATC 120, 137, 166
Sau96I G|GNCC 274
ScrFI CC|NGG 336
SexAI A|CC[AT]GGT 337
SfoI GGC|GCC 310
SgrAI CPu|CCGGPyG 281
SmlI C|TPyPuAG 8, 17
SphI GCATG|C 426
Taqƒ¿I T|CGA 58, 241, 387
TfiI G|A[AT]TC 12
TseI G|C[AT]GC 259, 422, 432, 438


Click here to view TAIR data

>AT2G34140.1 length:513
ATGGCGACTC AAGATTCTCA AGGGATTAAA CTCTTTGGCA AAACTATTGC 
50
ATTTAACACT CGAACAATAA AAAATGAAGA AGAGACACAC CCGCCGGAGC 
100
AAGAAGCCAC AATAGCCGTT AGATCATCAT CATCATCGGA TCTGACGGCC 
150
GAGAAGCGTC CGGATAAGAT CATAGCATGT CCAAGATGCA AGAGCATGGA 
200
GACAAAGTTC TGTTACTTCA ACAACTACAA CGTTAATCAG CCTCGACACT 
250
TTTGTAAAGG CTGCCACCGT TACTGGACCG CCGGTGGTGC ACTCCGGAAC 
300
GTTCCCGTCG GCGCCGGTCG TCGGAAGTCC AAACCACCTG GTCGTGTCGT 
350
GGTTGGTATG CTTGGAGATG GAAATGGTGT TCGCCAAGTC GAGCTTATAA 
400
ATGGCTTGCT CGTTGAGGAG TGGCAGCATG CCGCAGCCGC AGCTCACGGT 
450
AGTTTCCGGC ATGATTTTCC CATGAAGCGG CTCCGGTGTT ACTCCGACGG 
500
TCAATCGTGC TGA
550

>AT2G34140.1 longest ORF length:170
MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA 
50
EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN 
100
VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG 
150
SFRHDFPMKR LRCYSDGQSC 
200