|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G34440 | AGL29 | AGAMOUS-like 29 (.1) |
>AT2G34440.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, MspI, MwoI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, SwaI, TliI, TseI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AluI | AG|CT | 316, 351 |
| BsaJI | C|CNNGG | 447 |
| BspHI | T|CATGA | 206 |
| BsrI | ACTGGN| | 76 |
| BssKI | |CCNGG | 147 |
| BstEII | G|GTNACC | 55 |
| BstF5I | GGATGNN| | 370 |
| BstNI | CC|[AT]GG | 147 |
| BtgI | C|CPuPyGG | 447 |
| Cac8I | GCN|NGC | 94, 155, 480 |
| DdeI | C|TNAG | 121, 279, 319 |
| DpnI | GA-CH3|TC | 13 |
| DpnII | |GATC | 13 |
| HaeIII | GG|CC | 261 |
| HindIII | A|AGCTT | 352 |
| HinfI | G|ANTC | 179, 186, 202, 222, 341, 357, 376, 384 |
| Hpy188I | TCN|GA | 5, 225, 437 |
| HpyCH4III | ACN|GT | 229, 441 |
| HpyCH4IV | A|CGT | 286 |
| HpyCH4V | TG|CA | 113, 193, 477 |
| MboI | |GATC | 13 |
| N.BstNBI | GAGTCNNNN|N | 346, 389 |
| NcoI | C|CATGG | 447 |
| NlaIII | CATG| | 37, 205, 446, 496 |
| PspGI | |CC[AT]GG | 147 |
| Sau3AI | |GATC | 13 |
| ScrFI | CC|NGG | 147 |
| StuI | AGG|CCT | 262 |
| StyI | C|C[AT][AT]GG | 447 |
| Taqƒ¿I | T|CGA | 291, 405 |
| TfiI | G|A[AT]TC | 179, 186, 202, 222, 357, 376 |
| Tsp509I | |AATT | 254 |
| TspRI | NNCA[CG]TGNN| | 232 |
Click here to view TAIR data
>AT2G34440.1 length:519
ATGGGTCGGA GAAAGATCAA GATGGAGATG GTTCAGGACA TGAACACACG | 50 |
ACAGGTTACC TTTTCAAAAC GGAGGACTGG TTTGTTCAAG AAGGCGAGCG | 100 |
AGTTAGCCAC GCTCTGCAAC GCTGAGTTGG GCATCGTTGT CTTTTCACCA | 150 |
GGAGGCAAGC CTTTCTCCTA CGGGAAACCG AATCTTGATT CTGTTGCAGA | 200 |
GCGATTCATG AGAGAATATG ATGATTCAGA CAGTGGCGAT GAAGAAAAAA | 250 |
GTGGTAATTA CAGGCCTAAA CTGAAGAGGC TGAGTGAACG TCTCGATTTG | 300 |
CTCAACCAAG AGGTTGAAGC TGAGAAGGAA CGAGGCGAGA AGAGTCAGGA | 350 |
GAAGCTTGAA TCTGCTGGGG ATGAGAGATT CAAGGAGTCC ATTGAGACGC | 400 |
TTACCCTCGA TGAACTCAAT GAATACAAAG ATAGGCTTCA GACAGTCCAT | 450 |
GGTAGGATTG AAGGTCAAGT CAATCACTTG CAGGCTTCGT CTTGCCTCAT | 500 |
GCTTCTCTCC AGAAAATAG | 550 |
>AT2G34440.1 longest ORF length:172
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP | 50 |
GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL | 100 |
LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH | 150 |
GRIEGQVNHL QASSCLMLLS RK | 200 |