Locus |
Common name |
Short description |
AT2G36400 |
ATGRF3 |
growth-regulating factor 3 (.1) |
>AT2G36400.1 CDS map
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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstZ17I, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MseI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tsp509I, XbaI, XhoI, XmnI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
487, 979 |
AciI
| C|CGC |
532, 612 |
AflIII
| A|CPuPyGT |
93, 281 |
AluI
| AG|CT |
76, 221, 230, 262, 309, 904, 929, 990, 1055, 1164 |
AvaI
| C|PyCGPuG |
961 |
AvaII
| G|G[AT]CC |
1104 |
BalI
| TGG|CCA |
498 |
BamHI
| G|GATCC |
429 |
BanII
| GPuGCPy|C |
310, 930, 1016 |
BglII
| A|GATCT |
1126 |
BlpI
| GC|TNAGC |
933 |
BsaHI
| GPu|CGPyC |
487, 979 |
BsaJI
| C|CNNGG |
528, 593, 961 |
BsiHKAI
| G[AT]GC[AT]|C |
310, 930 |
BslI
| CCNNNNN|NNGG |
215, 438, 961 |
BsoBI
| C|PyCGPuG |
961 |
Bsp1286I
| G[GAT]GC[CAT]|C |
236, 310, 930, 1016 |
BsrBI
| GAG|CGG |
1065 |
BssKI
| |CCNGG |
202, 438, 960, 1018 |
BstF5I
| GGATGNN| |
460 |
BstNI
| CC|[AT]GG |
202, 438 |
BstXI
| CCANNNNN|NTGG |
593, 1167 |
BstYI
| Pu|GATCPy |
429, 700, 1126 |
Bsu36I
| CC|TNAGG |
305, 862 |
BtgI
| C|CPuPyGG |
528, 593 |
BtrI
| CAC|GTC |
588 |
Cac8I
| GCN|NGC |
29, 496, 512 |
DdeI
| C|TNAG |
79, 154, 304, 433, 750, 861, 932, 974, 1122 |
DpnI
| GA-CH3|TC |
268, 428, 699, 840, 1040, 1125 |
DpnII
| |GATC |
268, 428, 699, 840, 1040, 1125 |
EaeI
| Py|GGCCPu |
498, 531, 1112 |
EcoNI
| CCTNN|NNNAGG |
438 |
EcoO109I
| PuG|GNCCPy |
866 |
Fnu4HI
| GC|NGC |
32, 75, 294, 420, 532, 609, 615 |
HaeII
| PuGCGC|Py |
515 |
HaeIII
| GG|CC |
497, 530, 804, 864, 882, 1111 |
HhaI
| GCG|C |
514 |
HinP1I
| G|CGC |
514 |
HinfI
| G|ANTC |
54, 107, 192, 813, 826 |
HpaII
| C|CGG |
960, 1018 |
Hpy188I
| TCN|GA |
47, 57, 266, 735, 765, 823, 843, 975, 986 |
HpyCH4III
| ACN|GT |
239, 526, 538, 570 |
HpyCH4IV
| A|CGT |
486, 587, 647, 978 |
HpyCH4V
| TG|CA |
6, 73, 121, 446, 522, 577 |
MboI
| |GATC |
268, 428, 699, 840, 1040, 1125 |
MscI
| TGG|CCA |
498 |
MslI
| CAPyNN|NNPuTG |
592, 955 |
MspI
| C|CGG |
960, 1018 |
MwoI
| GCNNNNN|NNGC |
229, 294, 521, 615, 928, 1063 |
N.BstNBI
| GAGTCNNNN|N |
59, 818 |
NciI
| CC|[CG]GG |
960, 1018 |
NcoI
| C|CATGG |
593 |
NlaIII
| CATG| |
92, 280, 520, 592, 790, 925, 955, 1051, 1096 |
NlaIV
| GGN|NCC |
206, 429, 1015, 1075 |
NspI
| PuCATG|Py |
93, 281, 521 |
PciI
| A|CATGT |
93, 281 |
PflFI
| GACN|NNGTC |
54 |
PspGI
| |CC[AT]GG |
202, 438 |
PstI
| CTGCA|G |
74 |
RsaI
| GT|AC |
277 |
SacI
| GAGCT|C |
310, 930 |
Sau3AI
| |GATC |
268, 428, 699, 840, 1040, 1125 |
Sau96I
| G|GNCC |
865, 1104 |
ScrFI
| CC|NGG |
202, 438, 960, 1018 |
SfcI
| C|TPuPyAG |
74, 273 |
SmaI
| CCC|GGG |
961 |
StyI
| C|C[AT][AT]GG |
593 |
Taqƒ¿I
| T|CGA |
1175 |
TfiI
| G|A[AT]TC |
107, 192, 826 |
TseI
| G|C[AT]GC |
32, 75, 294, 420, 609, 615 |
TspRI
| NNCA[CG]TGNN| |
121, 242, 1153 |
Tth111I
| GACN|NNGTC |
54 |
XcmI
| CCANNNNN|NNNNTGG |
528 |
XmaI
| C|CCGGG |
961 |
Click here to view TAIR data
>AT2G36400.1 length:1197
ATGGATTTGC AACTGAAACA ATGGAGAAGC CAGCAGCAGC AACAACATCA | 50 |
GACAGAGTCA GAAGAACAAC CTTCTGCAGC TAAGATACCA AAACATGTCT | 100 |
TTGACCAGAT TCATTCTCAC ACTGCAACTT CTACTGCTCT TCCTCTCTTT | 150 |
ACCCCTGAGC CTACTTCTTC TAAACTCTCC TCTTTGTCTC CTGATTCTTC | 200 |
CTCCAGGTTC CCCAAGATGG GGAGCTTCTT TAGCTGGGCA CAGTGGCAAG | 250 |
AACTTGAACT ACAAGCTCTG ATCTACAGGT ACATGTTGGC TGGTGCTGCT | 300 |
GTTCCTCAGG AGCTCCTTTT ACCAATCAAG AAAAGCCTTC TCCATCTATC | 350 |
TCCTTCCTAC TTTCTTCACC ATCCTCTTCA ACACCTACCT CATTACCAAC | 400 |
CTGCTTGGTA TTTGGGAAGG GCAGCGATGG ATCCTGAGCC AGGCAGATGC | 450 |
AGGAGAACGG ATGGTAAGAA GTGGAGATGT TCAAGAGACG TCTTCGCTGG | 500 |
CCACAAGTAT TGCGAGCGCC ACATGCACCG TGGCCGCAAC CGTTCAAGAA | 550 |
AGCCTGTGGA AACTCCAACC ACCGTCAATG CAACTGCCAC GTCCATGGCT | 600 |
TCATCAGTAG CAGCCGCAGC CACCACTACA ACAGCAACAA CAACATCTAC | 650 |
GTTTGCTTTT GGTGGTGGTG GTGGTAGTGA GGAAGTGGTT GGTCAAGGAG | 700 |
GATCTTTCTT CTTCTCTGGC TCTTCTAACT CTTCATCTGA ACTTCTCCAC | 750 |
CTTAGTCAAA GTTGTTCGGA GATGAAGCAA GAAAGCAACA ACATGAACAA | 800 |
CAAGAGGCCA TACGAGTCCC ACATCGGATT CAGTAACAAC AGATCAGATG | 850 |
GAGGACACAT CCTGAGGCCC TTCTTTGACG ATTGGCCTCG TTCTTCGCTC | 900 |
CAAGAAGCTG ACAATAGTTC AAGCCCCATG AGCTCAGCCA CTTGTCTCTC | 950 |
CATCTCCATG CCCGGGAACT CTTCCTCAGA CGTCTCTCTG AAGCTGTCCA | 1000 |
CAGGCAACGA AGAGGGAGCC CGGAGCAACA ACAATGGGAG AGATCAGCAA | 1050 |
AACATGAGCT GGTGGAGCGG TGGAGGTTCC AACCACCATC ATCACAACAT | 1100 |
GGGCGGACCA TTGGCCGAAG CCCTGAGATC TTCTTCCTCA TCTTCCCCAA | 1150 |
CCAGTGTTCT CCATCAGCTT GGTGTCTCGA CACAAGCCTT TCATTGA | 1200 |
>AT2G36400.1 longest ORF length:398
MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF | 50 |
TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA | 100 |
VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC | 150 |
RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA | 200 |
SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH | 250 |
LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL | 300 |
QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ | 350 |
NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH | 400 |
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