fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G36400 ATGRF3 growth-regulating factor 3 (.1)

>AT2G36400.1 CDS map

>>Show genomic map




Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstZ17I, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MseI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tsp509I, XbaI, XhoI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 487, 979
AciI C|CGC 532, 612
AflIII A|CPuPyGT 93, 281
AluI AG|CT 76, 221, 230, 262, 309, 904, 929, 990, 1055, 1164
AvaI C|PyCGPuG 961
AvaII G|G[AT]CC 1104
BalI TGG|CCA 498
BamHI G|GATCC 429
BanII GPuGCPy|C 310, 930, 1016
BglII A|GATCT 1126
BlpI GC|TNAGC 933
BsaHI GPu|CGPyC 487, 979
BsaJI C|CNNGG 528, 593, 961
BsiHKAI G[AT]GC[AT]|C 310, 930
BslI CCNNNNN|NNGG 215, 438, 961
BsoBI C|PyCGPuG 961
Bsp1286I G[GAT]GC[CAT]|C 236, 310, 930, 1016
BsrBI GAG|CGG 1065
BssKI |CCNGG 202, 438, 960, 1018
BstF5I GGATGNN| 460
BstNI CC|[AT]GG 202, 438
BstXI CCANNNNN|NTGG 593, 1167
BstYI Pu|GATCPy 429, 700, 1126
Bsu36I CC|TNAGG 305, 862
BtgI C|CPuPyGG 528, 593
BtrI CAC|GTC 588
Cac8I GCN|NGC 29, 496, 512
DdeI C|TNAG 79, 154, 304, 433, 750, 861, 932, 974, 1122
DpnI GA-CH3|TC 268, 428, 699, 840, 1040, 1125
DpnII |GATC 268, 428, 699, 840, 1040, 1125
EaeI Py|GGCCPu 498, 531, 1112
EcoNI CCTNN|NNNAGG 438
EcoO109I PuG|GNCCPy 866
Fnu4HI GC|NGC 32, 75, 294, 420, 532, 609, 615
HaeII PuGCGC|Py 515
HaeIII GG|CC 497, 530, 804, 864, 882, 1111
HhaI GCG|C 514
HinP1I G|CGC 514
HinfI G|ANTC 54, 107, 192, 813, 826
HpaII C|CGG 960, 1018
Hpy188I TCN|GA 47, 57, 266, 735, 765, 823, 843, 975, 986
HpyCH4III ACN|GT 239, 526, 538, 570
HpyCH4IV A|CGT 486, 587, 647, 978
HpyCH4V TG|CA 6, 73, 121, 446, 522, 577
MboI |GATC 268, 428, 699, 840, 1040, 1125
MscI TGG|CCA 498
MslI CAPyNN|NNPuTG 592, 955
MspI C|CGG 960, 1018
MwoI GCNNNNN|NNGC 229, 294, 521, 615, 928, 1063
N.BstNBI GAGTCNNNN|N 59, 818
NciI CC|[CG]GG 960, 1018
NcoI C|CATGG 593
NlaIII CATG| 92, 280, 520, 592, 790, 925, 955, 1051, 1096
NlaIV GGN|NCC 206, 429, 1015, 1075
NspI PuCATG|Py 93, 281, 521
PciI A|CATGT 93, 281
PflFI GACN|NNGTC 54
PspGI |CC[AT]GG 202, 438
PstI CTGCA|G 74
RsaI GT|AC 277
SacI GAGCT|C 310, 930
Sau3AI |GATC 268, 428, 699, 840, 1040, 1125
Sau96I G|GNCC 865, 1104
ScrFI CC|NGG 202, 438, 960, 1018
SfcI C|TPuPyAG 74, 273
SmaI CCC|GGG 961
StyI C|C[AT][AT]GG 593
Taqƒ¿I T|CGA 1175
TfiI G|A[AT]TC 107, 192, 826
TseI G|C[AT]GC 32, 75, 294, 420, 609, 615
TspRI NNCA[CG]TGNN| 121, 242, 1153
Tth111I GACN|NNGTC 54
XcmI CCANNNNN|NNNNTGG 528
XmaI C|CCGGG 961


Click here to view TAIR data

>AT2G36400.1 length:1197
ATGGATTTGC AACTGAAACA ATGGAGAAGC CAGCAGCAGC AACAACATCA 
50
GACAGAGTCA GAAGAACAAC CTTCTGCAGC TAAGATACCA AAACATGTCT 
100
TTGACCAGAT TCATTCTCAC ACTGCAACTT CTACTGCTCT TCCTCTCTTT 
150
ACCCCTGAGC CTACTTCTTC TAAACTCTCC TCTTTGTCTC CTGATTCTTC 
200
CTCCAGGTTC CCCAAGATGG GGAGCTTCTT TAGCTGGGCA CAGTGGCAAG 
250
AACTTGAACT ACAAGCTCTG ATCTACAGGT ACATGTTGGC TGGTGCTGCT 
300
GTTCCTCAGG AGCTCCTTTT ACCAATCAAG AAAAGCCTTC TCCATCTATC 
350
TCCTTCCTAC TTTCTTCACC ATCCTCTTCA ACACCTACCT CATTACCAAC 
400
CTGCTTGGTA TTTGGGAAGG GCAGCGATGG ATCCTGAGCC AGGCAGATGC 
450
AGGAGAACGG ATGGTAAGAA GTGGAGATGT TCAAGAGACG TCTTCGCTGG 
500
CCACAAGTAT TGCGAGCGCC ACATGCACCG TGGCCGCAAC CGTTCAAGAA 
550
AGCCTGTGGA AACTCCAACC ACCGTCAATG CAACTGCCAC GTCCATGGCT 
600
TCATCAGTAG CAGCCGCAGC CACCACTACA ACAGCAACAA CAACATCTAC 
650
GTTTGCTTTT GGTGGTGGTG GTGGTAGTGA GGAAGTGGTT GGTCAAGGAG 
700
GATCTTTCTT CTTCTCTGGC TCTTCTAACT CTTCATCTGA ACTTCTCCAC 
750
CTTAGTCAAA GTTGTTCGGA GATGAAGCAA GAAAGCAACA ACATGAACAA 
800
CAAGAGGCCA TACGAGTCCC ACATCGGATT CAGTAACAAC AGATCAGATG 
850
GAGGACACAT CCTGAGGCCC TTCTTTGACG ATTGGCCTCG TTCTTCGCTC 
900
CAAGAAGCTG ACAATAGTTC AAGCCCCATG AGCTCAGCCA CTTGTCTCTC 
950
CATCTCCATG CCCGGGAACT CTTCCTCAGA CGTCTCTCTG AAGCTGTCCA 
1000
CAGGCAACGA AGAGGGAGCC CGGAGCAACA ACAATGGGAG AGATCAGCAA 
1050
AACATGAGCT GGTGGAGCGG TGGAGGTTCC AACCACCATC ATCACAACAT 
1100
GGGCGGACCA TTGGCCGAAG CCCTGAGATC TTCTTCCTCA TCTTCCCCAA 
1150
CCAGTGTTCT CCATCAGCTT GGTGTCTCGA CACAAGCCTT TCATTGA
1200

>AT2G36400.1 longest ORF length:398
MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF 
50
TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA 
100
VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC 
150
RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA 
200
SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH 
250
LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL 
300
QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ 
350
NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
400