fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G36450 HRD HARDY, Integrase-type DNA-binding superfamily protein (.1)

>AT2G36450.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AciI C|CGC 28, 276, 285
AluI AG|CT 172, 196, 201
ApoI Pu|AATTPy 543
AvaI C|PyCGPuG 142
BanII GPuGCPy|C 202
BfaI C|TAG 176, 306
BglI GCCNNNN|NGGC 282
BlpI GC|TNAGC 200
BsiEI CGPuPy|CG 27, 284
BsiHKAI G[AT]GC[AT]|C 202, 436
BslI CCNNNNN|NNGG 146
BsmI GAATGCN| 459
BsoBI C|PyCGPuG 142
Bsp1286I G[GAT]GC[CAT]|C 202, 436
BspHI T|CATGA 440
BsrGI T|GTACA 41
BssKI |CCNGG 519
BstF5I GGATGNN| 313
BstNI CC|[AT]GG 519
BstXI CCANNNNN|NTGG 348
BstYI Pu|GATCPy 89
Cac8I GCN|NGC 234, 358
DdeI C|TNAG 85, 199, 218, 465
DpnI GA-CH3|TC 88
DpnII |GATC 88
EaeI Py|GGCCPu 27, 284
EagI C|GGCCG 27, 284
Fnu4HI GC|NGC 25, 56, 150, 171, 270, 276, 285, 291, 303, 495
HaeIII GG|CC 26, 283
HinfI G|ANTC 397
Hpy188I TCN|GA 84
Hpy99I CG[AT]CG| 503
HpyCH4III ACN|GT 112, 483
HpyCH4IV A|CGT 165
HpyCH4V TG|CA 0, 359
MboI |GATC 88
MslI CAPyNN|NNPuTG 445
MspA1I C[AC]G|C[GT]G 287
MwoI GCNNNNN|NNGC 156, 177, 276, 291, 312, 434, 504
NlaIII CATG| 247, 361, 400, 424, 439, 549
NlaIV GGN|NCC 7
NotI GC|GGCCGC 28
NspI PuCATG|Py 425
PspGI |CC[AT]GG 519
RsaI GT|AC 40
SacI GAGCT|C 202
Sau3AI |GATC 88
ScrFI CC|NGG 519
Taqƒ¿I T|CGA 420
TfiI G|A[AT]TC 397
TseI G|C[AT]GC 56, 171, 270, 288, 303, 495
Tsp509I |AATT 542
XmnI GAANN|NNTTC 397


Click here to view TAIR data

>AT2G36450.1 length:555
ATGCAAGGAA CCTCCAAAGA CAATGGCGGC CGCCACCCTT TGTACAGGGG 
50
AGTAAGGCAG CGAAAGAACT CAAACAAATG GGTTTCTGAG ATCCGTGAGC 
100
CGAGAAAACC TAACCGTATC TGGTTAGGAA CATTCTCTAC CCCCGAGATG 
150
GCGGCAATAG CCTATGACGT GGCAGCTCTA GCCCTCAAAG GCAGTCAAGC 
200
TGAGCTCAAC TTCCCAAACT CAGTTTCCTC TTTGCCTGCC CCAACCTCCA 
250
TGTCTCCAGC AGACATCCAA GCAGCAGCCG CTTCGGCCGC TGCTGCTTTT 
300
GGTGCTGCTA GGGATGCGAT TGTTATGGCA AATAATAACA GCCAAACAAG 
350
TGGTGTGGCT TGCATGAATA GTAGTTATGA TAATACAAAT ATGAATGGAT 
400
TCATGGACGA GGATTTGGTA TTCGACATGC CTAATGTGCT CATGAATATG 
450
GCTGAAGGAA TGCTTCTTAG CCCCCCTCGT CCTACTGTCT TTGATGCTGC 
500
TTACGACGCT GATGGTTTTC CTGGAGGAGA CGATTACTTG TGGAATTTTC 
550
CATGA
600

>AT2G36450.1 longest ORF length:184
MQGTSKDNGG RHPLYRGVRQ RKNSNKWVSE IREPRKPNRI WLGTFSTPEM 
50
AAIAYDVAAL ALKGSQAELN FPNSVSSLPA PTSMSPADIQ AAAASAAAAF 
100
GAARDAIVMA NNNSQTSGVA CMNSSYDNTN MNGFMDEDLV FDMPNVLMNM 
150
AEGMLLSPPR PTVFDAAYDA DGFPGGDDYL WNFP
200