fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G36450 HRD HARDY, Integrase-type DNA-binding superfamily protein (.1)

>AT2G36450.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaII, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BsrDI, BssHII, BssSI, BstBI, BstZ17I, BtrI, BtsI, DrdI, EarI, EciI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NciI, NcoI, NgoMIV, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, RsrII, SalI, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SphI, TliI, Tth111I, XhoI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 1171
AccI GT|[AC][TG]AC 2168
AccII(FnuDII) CG|CG 1444, 1687, 3744
AciI C|CGC 1443, 4028, 4276, 4285
AclI AA|CGTT 707, 897, 906
AflII C|TTAAG 1291
AflIII A|CPuPyGT 3649
AluI AG|CT 318, 355, 669, 797, 935, 957, 1012, 1179, 1321, 1468, 1618, 1831, 1875, 1891, 2099, 2593, 2616, 2620, 3774, 3786, 3792, 3808, 4172, 4196, 4201, 5292, 5358, 5891
AlwNI CAGNNN|CTG 1622
ApoI Pu|AATTPy 11, 71, 387, 489, 2558, 3077, 3096, 4543, 5094, 5630, 5678, 5962
AseI AT|TAAT 556, 2523, 2973, 3232
AvaI C|PyCGPuG 4142
BalI TGG|CCA 3727
BanI G|GPyPuCC 1171, 2026
BanII GPuGCPy|C 958, 1013, 4202
BclI T|GATCA 1491, 3815, 5500
BfaI C|TAG 737, 887, 1350, 1505, 2515, 2565, 2618, 2931, 3023, 3209, 3238, 4176, 4306, 4634, 4737, 4998, 5075, 5170, 5237, 5601
BglI GCCNNNN|NGGC 2288, 4282
BglII A|GATCT 86
BlpI GC|TNAGC 1583, 1874, 4200
BsaAI PyAC|GTPu 2684, 3885, 5743, 6033
BsaJI C|CNNGG 326, 1445, 1717, 2867, 3142, 3487
BsiEI CGPuPy|CG 4027, 4284
BsiHKAI G[AT]GC[AT]|C 925, 958, 1013, 1262, 1585, 1598, 1758, 4202, 4436
BsiWI C|GTACG 6031
BslI CCNNNNN|NNGG 193, 836, 1741, 3493, 3759, 3923, 4146
BsmI GAATGCN| 4459
BsoBI C|PyCGPuG 4142
Bsp1286I G[GAT]GC[CAT]|C 925, 958, 1013, 1262, 1585, 1598, 1758, 4202, 4436
BspDI AT|CGAT 453, 550, 3181
BspHI T|CATGA 1425, 3639, 3659, 4440, 5036
BspT107I(HgiCI) G|G[TC][AG]CC 1171, 2026
BsrFI Pu|CCGGPy 495, 3043
BsrGI T|GTACA 2389, 4041, 5683
BsrI ACTGGN| 864, 3843
BssKI |CCNGG 830, 953, 1149, 1542, 2261, 3487, 4519
BstAPI GCANNNN|NTGC 4649
BstEII G|GTNACC 1232
BstF5I GGATGNN| 3248, 4313
BstNI CC|[AT]GG 830, 953, 1149, 1542, 2261, 3487, 4519
BstUI CG|CG 1444, 1687, 3744
BstXI CCANNNNN|NTGG 4348
BstYI Pu|GATCPy 86, 4089
Bsu36I CC|TNAGG 160
BtgI C|CPuPyGG 1445, 2867, 3142
Cac8I GCN|NGC 888, 1182, 1281, 1471, 2607, 2619, 3047, 4234, 4358, 5175, 5361
Cfr10I [AG]|CCGG[TC] 495, 3043
ClaI AT|CGAT 453, 550, 3181
DdeI C|TNAG 159, 518, 971, 1315, 1402, 1485, 1582, 1873, 1894, 1938, 2740, 2823, 3306, 3316, 3806, 4085, 4199, 4218, 4465, 5344
DpnI GA-CH3|TC 85, 608, 645, 751, 1490, 1545, 1942, 2193, 2418, 2545, 3029, 3635, 3814, 3931, 4088, 5499
DpnII |GATC 85, 608, 645, 751, 1490, 1545, 1942, 2193, 2418, 2545, 3029, 3635, 3814, 3931, 4088, 5499
DraI TTT|AAA 2085, 4710, 5008, 5465, 5571, 5802, 5886
DraIII CACNNN|GTG 1853
EaeI Py|GGCCPu 3727, 4027, 4284
EagI C|GGCCG 4027, 4284
EcoNI CCTNN|NNNAGG 836, 1741
EcoRV GAT|ATC 2450, 3012, 3749
Fnu4HI GC|NGC 812, 848, 1443, 1467, 1620, 1751, 1890, 4025, 4056, 4150, 4171, 4270, 4276, 4285, 4291, 4303, 4495, 5840
HaeIII GG|CC 184, 195, 281, 2255, 2280, 3726, 4026, 4283, 4660
HincII GTPy|PuAC 1071, 2504, 3368, 6025
HindIII A|AGCTT 319, 2594, 5359
HinfI G|ANTC 19, 147, 335, 455, 577, 765, 857, 911, 1054, 1406, 2212, 2440, 2672, 2882, 2928, 3137, 4397, 5340, 5351, 6042
HpaI GTT|AAC 2504, 6025
HpaII C|CGG 494, 3042
Hpy188I TCN|GA 28, 643, 657, 754, 822, 1016, 1051, 1433, 1484, 1548, 1604, 1822, 1839, 2739, 2943, 3015, 3351, 3390, 4084, 4742, 5637, 5674
Hpy99I CG[AT]CG| 4503
HpyCH4III ACN|GT 45, 591, 699, 1030, 1173, 1234, 1378, 1590, 1611, 2865, 3143, 3523, 4112, 4483, 4672, 4690, 4953, 5564, 6028
HpyCH4IV A|CGT 219, 706, 879, 896, 905, 921, 1905, 2466, 2683, 3059, 3884, 4165, 5742, 6032
HpyCH4V TG|CA 542, 620, 789, 1102, 1135, 1238, 1465, 1564, 1749, 1826, 1888, 2426, 3714, 3848, 3912, 4000, 4359, 4641, 4650, 5150, 5199, 5229, 5595, 5760, 5768, 5838
KpnI GGTAC|C 1171
MboI |GATC 85, 608, 645, 751, 1490, 1545, 1942, 2193, 2418, 2545, 3029, 3635, 3814, 3931, 4088, 5499
MfeI C|AATTG 5088
MscI TGG|CCA 3727
MseI T|TAA 210, 555, 703, 745, 1034, 1155, 1290, 1302, 1683, 1908, 2084, 2117, 2491, 2503, 2522, 2612, 2632, 2889, 2958, 2968, 2972, 3084, 3231, 3402, 3596, 3720, 3768, 3907, 4557, 4666, 4695, 4709, 4851, 4882, 5007, 5128, 5393, 5464, 5570, 5605, 5723, 5801, 5865, 5885, 6024
MslI CAPyNN|NNPuTG 660, 3580, 4445, 4970, 5413, 5467, 5745, 6020
MspA1I C[AC]G|C[GT]G 1445, 1619, 1892, 4287
MspI C|CGG 494, 3042
MwoI GCNNNNN|NNGC 317, 812, 1269, 1356, 1563, 1629, 1809, 2288, 4156, 4177, 4276, 4291, 4312, 4434, 4504, 4649, 5242
N.BstNBI GAGTCNNNN|N 340, 770, 5345
NdeI CA|TATG 2924, 5432, 5698
NheI G|CTAGC 888, 2619
NlaIII CATG| 468, 1328, 1424, 1496, 1531, 2299, 3156, 3492, 3638, 3648, 3658, 4247, 4361, 4400, 4424, 4439, 4549, 4652, 4902, 5035, 5766
NlaIV GGN|NCC 79, 1171, 1189, 1398, 2026, 4007
NotI GC|GGCCGC 4028
NsiI ATGCA|T 4642, 4651, 5151, 5230, 5761, 5769
NspI PuCATG|Py 3649, 4425
PacI TTAAT|TAA 2972
PciI A|CATGT 3649
PflMI CCANNNN|NTGG 3923
PsiI TTA|TAA 2112, 5579
PspGI |CC[AT]GG 830, 953, 1149, 1542, 2261, 3487, 4519
PvuII CAG|CTG 1619, 1892
RsaI GT|AC 521, 866, 1107, 1170, 1921, 2388, 2934, 3886, 4040, 4687, 5435, 5682, 6030, 6034
SacI GAGCT|C 958, 1013, 4202
SacII CCGC|GG 1445
Sau3AI |GATC 85, 608, 645, 751, 1490, 1545, 1942, 2193, 2418, 2545, 3029, 3635, 3814, 3931, 4088, 5499
Sau96I G|GNCC 184, 282, 4661
ScaI AGT|ACT 522, 1922, 2935
ScrFI CC|NGG 830, 953, 1149, 1542, 2261, 3487, 4519
SmlI C|TPyPuAG 1211, 1291, 1805, 2178, 5221, 6049
SnaBI TAC|GTA 2684, 3885, 5743, 6033
SpeI A|CTAGT 738
SspI AAT|ATT 166, 240, 2095, 2204, 3564, 5575, 5969
StuI AGG|CCT 2256
StyI C|C[AT][AT]GG 326, 1717
SwaI ATTT|AAAT 5466
Taqƒ¿I T|CGA 452, 549, 677, 2198, 3150, 3180, 3327, 3929, 4420, 5348
TfiI G|A[AT]TC 19, 147, 455, 577, 857, 911, 1054, 1406, 2440, 2672, 2882, 2928, 3137, 4397, 5351, 6042
TseI G|C[AT]GC 812, 1467, 1620, 1751, 1890, 4056, 4171, 4270, 4288, 4303, 4495, 5840
Tsp45I |GT[CG]AC 203, 565, 1231, 1449, 2133, 4956
Tsp509I |AATT 10, 31, 63, 70, 120, 142, 386, 488, 535, 557, 629, 770, 1024, 2114, 2520, 2524, 2557, 2699, 2744, 2887, 2970, 2974, 3076, 3086, 3095, 3265, 3550, 3592, 3598, 3722, 3766, 3818, 4542, 4712, 4722, 4816, 4849, 4880, 4984, 5043, 5087, 5093, 5395, 5629, 5677, 5691, 5754, 5961, 5977
TspRI NNCA[CG]TGNN| 975, 1591, 2286, 2417
XbaI T|CTAGA 3210
XcmI CCANNNNN|NNNNTGG 3842, 4988
XmnI GAANN|NNTTC 4397, 5044, 5634


Click here to view TAIR data

>AT2G36450 genomic sequence (4001-4555,) length:6054
ttgatacaat gaatttgatg attcattgtc cgaattagac tactcacagt 
50
ctcacataaa tatcaattct aaatttttgg ttccaagatc tcaaagtctt 
100
cacttctcat tttgtaaaca caattttttt caagggaaac aaaaattgaa 
150
tcattttacc tgaggaatat tattgggcta caatgggccg tagtgaggcc 
200
gaagtcacac cttaaataga acgtggtaga agttactata atattagagt 
250
tacaaaccag taatcacgga agtagtaaaa acggcccata gaaagtataa 
300
acaatccaac ggctgaaaaa gcttaccttg gagaagagtc caaaatatct 
350
tctggaagct accatcactc tctcctatat aactcaaaat tcaccatcat 
400
cttcatcatc atcatcatca tcatcctttc tttatccaac tttcttcacc 
450
aaatcgattc ttcttcaacc ATGTCTTCCT TCACCTCCAA ATTCGCCGgt 
500
aacacttcat ctctctttct cagtactctg tttatcaatt ttctgcacaa 
550
tcgatattaa tttgtgtcac aagtttggat tcttcgttga tacggtgcta 
600
ctttgatgcg atctcgtctt ctgcactaaa aattgataga ttatccgatc 
650
acgcacatca gaatgatttt agctgtcttc gatttggttt ttaggtctta 
700
cggtttaacg tttttgaggt ttatataaag gctttggact agttgtttaa 
750
gtgatctgac tatacgagtc taatttttgg gttttgctct tgcagATGAG 
800
CTGATTGCTA ACGCTGCTTA CATCGGAACA CCTGGAAAAG GTATCCTTGC 
850
GGCAGATGAA TCAACTGGTA CTATTGGGAA ACGTCTCGCT AGCATCAACG 
900
TTGAGAACGT TGAATCCAAC AGACGTGCTC TTCGTGAGCT TCTCTTCACT 
950
ACTCCTGGAG CTCTTCCTTG CCTCAGTGGT GTTATCCTCT TTGAAGAAAC 
1000
TCTTTACCAG AAGAGCTCTG ATGgtaattg acagtttaac atcgctatat 
1050
gtctgaatct gtgtatcatc gttgactttg attggggttg attttggttg 
1100
tgatgcagGT ACGCCTTTTG TTGATATGTT GAAGAGTGCA GGAGTTTTGC 
1150
CTGGTATTAA GGTTGATAAG GGTACCGTTG AGCTTGCTGG AACCAATGGT 
1200
GAGACTACTA CTCAAGGTCT TGATGGTCTT GGTGACCGTT GCAAGAAATA 
1250
CTACGAGGCT GGTGCTCGTT TCGCCAAGTG GCGTGCGGTT CTTAAGATTG 
1300
GTGTTAATGA GCCATCTCAG TTAGCTATCC ATGAGAACGC TTATGGATTG 
1350
GCTAGGTATG CTGTCATTTG TCAGGAGAAC GGTCTTGTGC CGATTGTGGA 
1400
GCCTGAGATT CTTGTTGATG GCTCTCATGA CATTCAGAAG TGTGCCGCGG 
1450
TGACAGAGCG TGTTCTTGCA GCTTGCTACA AGGCTCTGAG TGATCACCAT 
1500
GTCTTGCTAG AAGGAACACT CTTGAAACCT AACATGGTTA CTCCAGGATC 
1550
AGAGAGTGCG AAGGTTGCAC CAGAGGTGAT TGCTGAGCAC ACTGTCCGTG 
1600
CTCTTCAGAG GACAGTTCCA GCTGCTGTTC CAGCCATAGT GTTCTTGTCT 
1650
GGTGGACAGA GCGAGGAAGA GGCGACAAGA AACCTTAACG CGATGAACCA 
1700
GTTGAAGACA AAGAAGCCTT GGTCGTTGTC TTTCTCCTTT GGAAGGGCGT 
1750
TGCAGCAGAG CACTTTGAAG ACTTGGGGAG GAAAAGAGGA GAATGTGAAG 
1800
AAGGCTCAAG AAGCGTTCTT GGTCAGATGC AAAGCTAACT CTGAAGCAAC 
1850
ACTTGGTGCT TACAAGGGTG ATGCTAAGCT CGGTGAAGGT GCAGCTGAGA 
1900
GCCTTCACGT TAAGGATTAC AAGTACTGAa gaaagaggct gaggatcgta 
1950
gtttttatat catcgtttat gttcttgctt tcactttctc tgttttttgt 
2000
ttggtgtttt gtttagaaga gtggtggcac caaagaaccc cgtttatact 
2050
tttttatgag gtctttgtgt tcttatgaag cctttttaaa aatgaatatt 
2100
agcttgttgg gttataattt aacattatca atagtgacga catttgggcg 
2150
gttgtatagt tcataatgtc taccaaactc aagaaaatag aaaagatcat 
2200
cgaaatattt tggactccca actttgaaac ccaaaggtaa catacaatct 
2250
ctaaaaggcc tcctggcaca acagaagaac aggccagtga ggctaccaac 
2300
catgcttaca catttcaaca tccatatttt ttagcattag aaaactcttt 
2350
tcttttgaat gttgtattta ttcaatcaaa acgaaatatg tacatattct 
2400
ttttttcttt tgtatcagtg atctacttgc aaactttttg gaatcctttg 
2450
atatcaccac tatttctacg ttgaaaggat ttaccgactg ctttaataat 
2500
atagttaaca ttctacctag taattaattt atggcataag aagtaagatc 
2550
aaaagcaaaa tttttactag acaatgtatt ttatatacac aaaaagcttt 
2600
tgttaggcaa gcattaaagc tagcttacca ttattaaaat atatatatat 
2650
atatatatat atatatttat tagaatcatt ctctacgtag tcaatagaat 
2700
aattagtttt gatttttcgt tagttacaac aacaaaatat ctgagaattg 
2750
agagactttg agaacatata gacaccatac ttggagactt tgagaacaaa 
2800
tagtatagac accacaactt tcacttagac tttgggaaac tataatgaaa 
2850
ccaagtattt actacaccgt gggttagtta tagattcaaa ttaagtggta 
2900
tttgtagcca atacattagt tagcatatga atctagtact tgttctgatt 
2950
tattttctgt taatcaagtt taattaatta gtttacaatg tttatgcttg 
3000
atttttacat agatatccga cagcctagta gatcaagtgc caaccggcac 
3050
gcaccagcag acgtaggtga tagagaaaat ttgatttaat taggtgaatt 
3100
tcttttttca cacacataca tctatggtgg gaacaaagat tccacggtat 
3150
atcgagacat gaaatggatt tcttacccta atcgatttga caagtttgaa 
3200
tgagaataat ctagaaaatc tattacatta tattaatgtc tagtggggat 
3250
gataaagcct caaagaaatt gacccaaacg aaacagcaat cacacactaa 
3300
cttcttctta gcatttctaa gacacttttc gatgtgatta ttctataaat 
3350
atccgaccct tcaccaagtc aactctatat tcatttctat tctgaaataa 
3400
ccattaaccc caaagtaagc aatatatagg aaatacatat atacattata 
3450
gtcttattat gacattggag aagttgtggt ttatacccct ggacatggag 
3500
tgtatatata gcaacattga aatacagttt cacaatatgt aaataacaca 
3550
aaattatacc aaaaatattg taaatcacac aaatgaagta gataatttta 
3600
atttttattg aagtgttttc aataaagtgg tgtcaagatc atgagaacac 
3650
atgtattttc atgaacctgt gatggcgaaa acgaccactt tagatagaaa 
3700
catatataca tcatttgcaa cttaattggc caccacccaa aaaaacgcga 
3750
tatccaacaa gaggagcaat taaaaagctg tctttacagc tttagcttca 
3800
tcatctctaa gctgtgatca attcctccca aaccattttc taactggttt 
3850
gcactttctt cactctcttc tcttcactct tcactacgta cttcactctc 
3900
caactaactt aactgcacca taaaatggct tcgatctctt cctctccttc 
3950
ctcaaactca tcactcttct ctactcaaaa ccctaatact cattatcaat 
4000
ATGCAAGGAA CCTCCAAAGA CAATGGCGGC CGCCACCCTT TGTACAGGGG 
4050
AGTAAGGCAG CGAAAGAACT CAAACAAATG GGTTTCTGAG ATCCGTGAGC 
4100
CGAGAAAACC TAACCGTATC TGGTTAGGAA CATTCTCTAC CCCCGAGATG 
4150
GCGGCAATAG CCTATGACGT GGCAGCTCTA GCCCTCAAAG GCAGTCAAGC 
4200
TGAGCTCAAC TTCCCAAACT CAGTTTCCTC TTTGCCTGCC CCAACCTCCA 
4250
TGTCTCCAGC AGACATCCAA GCAGCAGCCG CTTCGGCCGC TGCTGCTTTT 
4300
GGTGCTGCTA GGGATGCGAT TGTTATGGCA AATAATAACA GCCAAACAAG 
4350
TGGTGTGGCT TGCATGAATA GTAGTTATGA TAATACAAAT ATGAATGGAT 
4400
TCATGGACGA GGATTTGGTA TTCGACATGC CTAATGTGCT CATGAATATG 
4450
GCTGAAGGAA TGCTTCTTAG CCCCCCTCGT CCTACTGTCT TTGATGCTGC 
4500
TTACGACGCT GATGGTTTTC CTGGAGGAGA CGATTACTTG TGGAATTTTC 
4550
CATGAtagtt aaacaaacca accatataaa tatgtgattt tgtgtgtttc 
4600
tatatatgta tgtatgaaat aaataaatat ggtgtctagt gatgcattgt 
4650
atgcatggtt aggcccgtta agaccgtaat ataaggtcgt actgtattaa 
4700
gtttttgtct ttaaattatt ctcaatttac aatcttatct agtctgatgt 
4750
aatgccaaat gtaatgaata gtcaatgcct tgactgatac tcatttgttt 
4800
attttacaga tggatacaat tttcgtaggg cttggtatgg ttgatatact 
4850
aattaaatat gtctaatatg attgatatac taattaaata tgtctaatat 
4900
agacatgata aacaatcatt atttatatat aagaaaacac gaaaccattt 
4950
tgaaccgtga cctgacataa gtatgaagcc atttgaattg tgggattttc 
5000
taggagtttt aaaaatatac atataatggt caatgtcatg aaataattct 
5050
acttgtaata tatttgacca ccacttctag tatatagcaa ttgaaatttt 
5100
gatatagttt gaacttcggc acataaagtt taatgaaaaa aagttacaat 
5150
atgcataatg tatatataac cctagcaagc ggataatata ataaaatata 
5200
tgcaaacaat cttacaaata cttgaggata tgcatagcct agttagcaga 
5250
atgggaaaag aaaaaacgaa aaaaaagaaa agaaaaggag aggagctaaa 
5300
tgggtttggt gaggaaaaaa cacaagatgg ttatggaaac gagtcttagt 
5350
cgaatcataa gcttgctgat ttttttcaat atgtatttta ccttttaatt 
5400
tgattactca tatatatgtg tctttttgag acatatgtac ctatttttta 
5450
ctttattatc atcatttaaa tggttatgtt tatgaaacat ttttctattt 
5500
gatcaaatat gatttggaag ttgtaaatgc gaaaccgaac caaaaataac 
5550
ttttctttta ggttacagtt tttaaatatt ataaatgaat atattttgca 
5600
ttctagttaa atcaaaactt tagagttttg aatttattct gaactataaa 
5650
gatgcttgaa aacaaagcaa atcatccgaa tttgtacatc aaaattacat 
5700
atgttccaag ttccaacagg ttatttaagg gtaacatttt catacgtatg 
5750
aaagaaattg atgcattcat gcatattaca tacatttgaa ctatttgggt 
5800
atttaaaact ataaaaaaga aaaaaagaaa gaaaaaactt gcagccttcg 
5850
taacccatac aacccattaa aacactattt caccttttaa atagcttcaa 
5900
aataaaaaga agaccaatga ataggtaaat agtcttgttg gttagaaatg 
5950
aatgaatgaa tgaatttgaa tatttggtaa ttgttTTATT TCTTCTGTTC 
6000
GTCATCTTCT CCTCCCACCA AGATGTTAAC CGTACGTACT TTGAATCTCT 
6050
CAAG
6100