fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G36560 AT hook motif DNA-binding family protein (.1)

>AT2G36560.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 522
HindIII A|AGCTT 1233
NcoI C|CATGG 600
StyI C|C[AT][AT]GG 600


Click here to view TAIR data

>AT2G36560.1 length:1725
ATGTCGAACT CAACGCCCTG CATCACTCCC TTTCCGGTCA CCAAGACTGC 
50
CGTAGCGGCA CCAGCCACTG TGGTGGAGGG TGTCAACGAC GCGAACTCAA 
100
CGCCCATCTC TCCCTTTCCG GTCACCAAGA CTGCCGAAGC GGCACCAGCC 
150
ACGGTGGTGG AGGGTGTCAA CGACGCGAGC AGGAAGAGAG AAAGGCCGAA 
200
GACGTATCGT GATTATAAAG GGAGGTTTAT CACAGCATCT GGGACATTTA 
250
CGCCGAGGTC ATCGTTGAGG AAGAGGAGAG GTGACATGTC TATGAGGCTT 
300
GGAGGAGGGG ACTTCACGCC GCATAGCTTC ACAGTTAATA AAGGAGAGGA 
350
TATAATCAAG AGGATCATGT CCTTCACTGC AAATGGTTCT CGTGGGATCA 
400
GTGTTTTGTC AGTAAATGGT GCGGTTGCTA ACGTTACGAT TCTACCTCAC 
450
GGTTCAAGCC GCAGGGTCAT GACGTTTAAG GAGGAGTATG AGATAGTATC 
500
GCTGACCAAT AATACAATGG CGATATCTGA GAGCGGAGGA GTGAAAAATA 
550
AGACCGGAGG GTGGCGGATT ACGATTGGTG GAGCTGCTGG TGGACGTGTC 
600
CATGGTGGTG CTTTGGCTGG GAGTCTCATT GCAGCAAGTC CAGTCCAAGT 
650
TGTGATTGGA AGTTTCTGGC CGTTGATCAC AAATTCGCGT CAGAAGAGGA 
700
AGTATGTGTC CAAAGCTATG GTTGCTCCAT CCATAACACC AAACTTGGTG 
750
GCTTCCTCAT CCACAAGACC GGTCCAACAA CCAGAGATGG TTGGCCCTTC 
800
TCACTCTCAG AAGAGGAACA GCGAGTCCAA CAGAACTATG GTTGTTCTTT 
850
CAGCCACACC ACCAAACACA TTGGCTTCCT CATCCACAGG ACCGGTCCAA 
900
CAACCAGAGA TGGTTGGCCC TTCTCACTCT CAGAAGAGGA ACAGTGAGTC 
950
CAACAAAACT ATGGTTGTTC TTTCAGCCAC ACCACCAAAC ACATTGGCTT 
1000
CCTCATCCAC AGGACCGGTC CAACAACCAG AGATGGTTGG CCCTTCTCAC 
1050
TCTCAGAAGA GGAACAGTGA GTCCAACAGA ACTACGGTTG TTTTTTCAGC 
1100
CACACCACCA AACACATTGG CTTCCTCATC CACAGGACAA GTCCAGGGAC 
1150
CAGATATGAT TGGCCCTTCT CACTCTCAGG AGAAAAAAGA TGAGTCCAAC 
1200
AACGCTATGG CTGTTTTTTC ACCCACAGCA CCAAGCTTCT TGGCTTCCTC 
1250
ATCCACAGAA CAAGTCCAAC AACCAGATAT GATTGGCCCT TATCACTCTC 
1300
GGCAGAGGAA CGATGAGTCC AACGATGTGA TTCTTCTACC CACAGTTCAA 
1350
TACTTACTGG CTTCCTCATT CACTAGACAA GTCCAACGTC AACCAGAGAT 
1400
GACAGGCCCT TCTCATTCTC AGAAGAGGAA TGATGAGTCG CAAGCTGCGG 
1450
TTGTTACACC AGCAATACCA AACTCATTGG CTTCCTCATT CACTGGACAA 
1500
GTCCAACGTC AAGCAGAAAT GACAGGCCCT TCTCATTCTC AGAAGAGGAA 
1550
CAATGAGTCC CAAGCTGCGG TTGTTACACC TGAAATACCT AACTTATTGG 
1600
CTTCCTCATT CACCGGACCA GAGATGATAG GACCTTCTCA TTCTGAGGAG 
1650
ATGAACGATG AGTTTAACCC TTCTCAGTTT CTGACTCTAG GGTGGTACAG 
1700
CTCTACACCG GAGCAAGACA AGTAA
1750

>AT2G36560.1 longest ORF length:574
MSNSTPCITP FPVTKTAVAA PATVVEGVND ANSTPISPFP VTKTAEAAPA 
50
TVVEGVNDAS RKRERPKTYR DYKGRFITAS GTFTPRSSLR KRRGDMSMRL 
100
GGGDFTPHSF TVNKGEDIIK RIMSFTANGS RGISVLSVNG AVANVTILPH 
150
GSSRRVMTFK EEYEIVSLTN NTMAISESGG VKNKTGGWRI TIGGAAGGRV 
200
HGGALAGSLI AASPVQVVIG SFWPLITNSR QKRKYVSKAM VAPSITPNLV 
250
ASSSTRPVQQ PEMVGPSHSQ KRNSESNRTM VVLSATPPNT LASSSTGPVQ 
300
QPEMVGPSHS QKRNSESNKT MVVLSATPPN TLASSSTGPV QQPEMVGPSH 
350
SQKRNSESNR TTVVFSATPP NTLASSSTGQ VQGPDMIGPS HSQEKKDESN 
400
NAMAVFSPTA PSFLASSSTE QVQQPDMIGP YHSRQRNDES NDVILLPTVQ 
450
YLLASSFTRQ VQRQPEMTGP SHSQKRNDES QAAVVTPAIP NSLASSFTGQ 
500
VQRQAEMTGP SHSQKRNNES QAAVVTPEIP NLLASSFTGP EMIGPSHSEE 
550
MNDEFNPSQF LTLGWYSSTP EQDK
600