fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G36610 ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1)

>AT2G36610.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, DpnI, DpnII, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HindIII, HpaI, HphI, Hpy188I, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MwoI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacI, SacII, SalI, SapI, Sau3AI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, StyI, SwaI, Tsp45I, TspRI, Tth111I, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 31
AccIII(BspMII) T|CCGGA 282, 306
AluI AG|CT 14, 44, 234, 273, 297, 321, 477, 551
ApaLI G|TGCAC 122
AvaI C|PyCGPuG 247
BfaI C|TAG 149, 450
BsaJI C|CNNGG 536
BsaWI [AT]|CCGG[AT] 282, 306
BsiHKAI G[AT]GC[AT]|C 122
BsoBI C|PyCGPuG 247
Bsp1286I G[GAT]GC[CAT]|C 122
BspDI AT|CGAT 25
BspEI T|CCGGA 282, 306
BsrDI GCAATGNN| 156
BsrI ACTGGN| 336
BssKI |CCNGG 385, 535
BstNI CC|[AT]GG 385, 535
BstUI CG|CG 31
BstXI CCANNNNN|NTGG 335
Cac8I GCN|NGC 230, 547
ClaI AT|CGAT 25
DdeI C|TNAG 426
Fnu4HI GC|NGC 13, 233, 341, 550
HhaI GCG|C 30
HinP1I G|CGC 30
HinfI G|ANTC 278, 302, 420
HpaII C|CGG 281, 305
HpyCH4III ACN|GT 187
HpyCH4V TG|CA 121, 342, 518, 548
MseI T|TAA 192
MslI CAPyNN|NNPuTG 416
MspA1I C[AC]G|C[GT]G 552
MspI C|CGG 281, 305
NlaIII CATG| 140, 516
NlaIV GGN|NCC 368
PaeR7I C|TCGAG 247
PspGI |CC[AT]GG 385, 535
PstI CTGCA|G 343, 549
PvuII CAG|CTG 552
RsaI GT|AC 108
ScrFI CC|NGG 385, 535
SfcI C|TPuPyAG 343, 549
SmlI C|TPyPuAG 247, 406
SspI AAT|ATT 5
Taqƒ¿I T|CGA 24, 246
TfiI G|A[AT]TC 278, 302, 420
TliI C|TCGAG 247
TseI G|C[AT]GC 13, 233, 341, 550
Tsp509I |AATT 462
XbaI T|CTAGA 451
XhoI C|TCGAG 247


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>AT2G36610.1 length:558
ATGGAATATT GGAGCAGCTC CTTCATCGAT GGCGCGTCTT CTTCCAGCTT 
50
CATCTCTCCT TTCTATAACT TTGACCATTT TTCAGGAAAC CAAGACAACA 
100
GATGTTTAGG TACAATGATG GGTGCACAAC AAGATATACT TCATGTTCCT 
150
CTAGCAATGG TAGAGAGTGG CTATGGAGAA GAAAGCAACA GTTTTAATGG 
200
ACAGGAGAAG AAAAAAAAGA AGATGACGAG CGAGCAGCTA AAGTTCCTCG 
250
AGAGAAGTTT CCAAGAAGAG ATAAAGCTGA ATCCGGACAG GAAGATGAAG 
300
CTGAATCCGG ACAGGAAGAT GAAGCTGTCC AAAGAACTGG GGCTGCAGCC 
350
GAGACAGATT GCGGTTTGGT TCCAGAACAG GAAAGCCAGG TGGAAGAACA 
400
AACAACTTGA GCATCTCTAT GAATCACTAA GACAAGAGTT TGATATTGTC 
450
TCTAGAGAAA AGGAATTGCT ACAAGAAGAG CTAATACAAC TGAAATCAAT 
500
GATAAGAGAG GATAGTTCAT GCAAGAAGAA ACAAACCTGG GAAAAAGCCT 
550
GCAGCTGA
600

>AT2G36610.1 longest ORF length:185
MEYWSSSFID GASSSSFISP FYNFDHFSGN QDNRCLGTMM GAQQDILHVP 
50
LAMVESGYGE ESNSFNGQEK KKKKMTSEQL KFLERSFQEE IKLNPDRKMK 
100
LNPDRKMKLS KELGLQPRQI AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV 
150
SREKELLQEE LIQLKSMIRE DSSCKKKQTW EKACS
200