fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G36960 TKI1 TSL-kinase interacting protein 1 (.1.2.3)

>AT2G36960.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
ApaI GGGCC|C 321
BglII A|GATCT 1480
EcoRV GAT|ATC 1059
HindIII A|AGCTT 413, 672, 955
PstI CTGCA|G 803
PvuII CAG|CTG 908, 967
StyI C|C[AT][AT]GG 464, 687, 1001
XbaI T|CTAGA 1483
XhoI C|TCGAG 1324


Click here to view TAIR data

>AT2G36960.1 length:2232
ATGCTTAAAC AGTTTACGCA TTATTGCGAA ATGCAAGCCG AGCTGATACC 
50
CGAAGGTCCT AACGGTGAGG GCCGTTTATC AAACCAGAAC AGCAACCCTA 
100
ATTTACTCTC TTCTGCTTCT ATCAGTATTA CTCAGTTTCC TGCTAAGAAG 
150
CCGACTAGGC AATGGGCTGC TTGGACACAT CAAGAAGAGG AAAGTTTCTT 
200
CACTGCTCTT CGTCAAGTTG GAAAGAATTT TGAGAAGATA ACTTCTCGTG 
250
TTCAGAGCAA AAACAAGGAC CAGGTCAGGC ATTACTATTA TCGTTTAGTG 
300
AGGCGTATGA ACAAACTTTT GGGCCCGGAT CTGAGCCTTG ATGCCAAGAA 
350
CCCAAAGGAC ACCAATGCTG CAATGCTACG ATGGTGGTCT TTGCTTGAAA 
400
AGTATAGCTG CAAAGCTTCA AAACTTCATC TCAAGCCCCG GAGATTCAAA 
450
CTATTTATAG AGGCCTTGGA ACACCAATTG CTGAAAGACC GCAGAAAGAG 
500
CATAAGAAAA CGGACTTGCC AGGGAGAAAA TCTCTCTTCT GCTTCCCTCG 
550
GAAACATCTC AAGTCATAGT AGAGAAAGAG GATTGGATAA CCGTCCATTT 
600
AAACTTATTC TCTCCGACGG CCAAAATGTT AAAAAGCTAG GGCCTGGAAG 
650
AGCATCTACC AAACATGGTG AAAGCTTAAG TGTCAACCTT GGTGACGAAA 
700
AAGAAGACAC AGCCTTTGGG AGAGGTGGAA GGCAACGGCG AAAACAAGGT 
750
TATAGAAAAT GGGAAAAAGC TGCAATAGAT GGGGTCTCTC TGGTTGCTGA 
800
TGCTGCAGAG CATTTGGAAC GAACATCAAT TGACAAAGAT ATGGATGATC 
850
AAACAGATTT AGGTCCCACA AGATATTTAA CCGGAAAGTC TCCACTTTCT 
900
CTATGCTCAG CTGGTGATGT TCCTCTCAGT GATGCCAATA TGCAGTTTTC 
950
TGCCAAGCTT AAACTTCAGC TGTTCCCGAT TGATGAATGT ACTCGAAGAT 
1000
CCTTGGAAAT GGATAAGCAC AATCCGCATC TTGAACTTAC TCTTAGTAAT 
1050
CGCAAGAAGA TATCATCTGT ACTTGAACAT CTCAATCGCA AATGGGGAAG 
1100
CTCAAGTTGT GCGACTGGAG AGCTATTGCT ATTTCCTTAC AACGCACGAA 
1150
AAGAAACTGT AACGTGCCAT CAGAGGTGGA CCCATGACTC TTTTCTAAGC 
1200
GCAGCAGAAG TGCATTCAAT GGTCGGAAGT CCTTCGGTTT TCCGCTTAAG 
1250
GTATGGTTGG TTTGTCCATG ATGCGTCAGG TTCTATTATT TCTCAAGTTC 
1300
CAACTTCAGA TCCTTGCCCT TCACTCGAGG ATGACATGAA TGTGGATAGG 
1350
TTGAACGAGG TCAACATGCT CCTTACTGAA TCAGGACCCT TGTCTGTGCA 
1400
TTCAACTGCT GAACAAACGA CATCTGTAGA GCCCAGTCAG GGTCTAGTAT 
1450
GTGCATCTGG TGTCCATGAT CGTCCCGCAA GATCTAGAGA TGATTATGAA 
1500
CCTGCTTCAA CGAGTATTAC TCCACTTGAG CATTTGAGCG GCGGTAATGC 
1550
ACAATCACCA GGAGAATGGG CTGATAGTCT TACTAACATA AGTATAGGTG 
1600
ATCTACTTTC TGAAGTGCCC GATGACATAG ATAGTGATGG TGTTGATCCA 
1650
CCTGCCACCG AAGGTTCACA TTACCTCCTT CGAGATGTCC CATTTACCTC 
1700
TGACTCTTTT GATGCTGCAA TTGCTGCTCA TATACTAAGA CACCAGAACA 
1750
AGCCAAGTGC TCAACTACCG CTGACTTCTG GCTCTTCCTC TCTGTGGGAT 
1800
GATGAAGAAA CACGTGATGC CTTCTCTTTC CAAAAAAATC GTTTCGCAAA 
1850
TTCCACCGAG CTGGCTAGTG TTGCTTCTCC TAAAGGTGTT GGCAGAGTAA 
1900
ATGGAGAGCC TTCACAGTTG GTGGAGGCTT CATCCGGCGA TGAGGGATCT 
1950
TATAACCCTC ATGACGATGG AGATCCAATG GAAGAGGGTC CAGCAGACCC 
2000
TCATACGATG GATTCTCCAG GGAAGACCCC TTGTGGACTT GCGGATGTAT 
2050
ACTGGCCCGA CTCGTTAGGA CCACTGGATT TAGACATTAG ATCGTCAAAG 
2100
TATACAGATG ATTTGATCCT TAGTGAGAGC CTCGGGGGAT TGAGCCGTCT 
2150
GATAGCAACC AGCCTTGATG CGTTTCAGAA CTGCTCGCTC TTTGGGTTCG 
2200
ACAATAAGAA GGACAAGTCT AACATGGTAT GA
2250

>AT2G36960.1 longest ORF length:743
MLKQFTHYCE MQAELIPEGP NGEGRLSNQN SNPNLLSSAS ISITQFPAKK 
50
PTRQWAAWTH QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV 
100
RRMNKLLGPD LSLDAKNPKD TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK 
150
LFIEALEHQL LKDRRKSIRK RTCQGENLSS ASLGNISSHS RERGLDNRPF 
200
KLILSDGQNV KKLGPGRAST KHGESLSVNL GDEKEDTAFG RGGRQRRKQG 
250
YRKWEKAAID GVSLVADAAE HLERTSIDKD MDDQTDLGPT RYLTGKSPLS 
300
LCSAGDVPLS DANMQFSAKL KLQLFPIDEC TRRSLEMDKH NPHLELTLSN 
350
RKKISSVLEH LNRKWGSSSC ATGELLLFPY NARKETVTCH QRWTHDSFLS 
400
AAEVHSMVGS PSVFRLRYGW FVHDASGSII SQVPTSDPCP SLEDDMNVDR 
450
LNEVNMLLTE SGPLSVHSTA EQTTSVEPSQ GLVCASGVHD RPARSRDDYE 
500
PASTSITPLE HLSGGNAQSP GEWADSLTNI SIGDLLSEVP DDIDSDGVDP 
550
PATEGSHYLL RDVPFTSDSF DAAIAAHILR HQNKPSAQLP LTSGSSSLWD 
600
DEETRDAFSF QKNRFANSTE LASVASPKGV GRVNGEPSQL VEASSGDEGS 
650
YNPHDDGDPM EEGPADPHTM DSPGKTPCGL ADVYWPDSLG PLDLDIRSSK 
700
YTDDLILSES LGGLSRLIAT SLDAFQNCSL FGFDNKKDKS NMV
750