fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G37590 AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1)

>AT2G37590.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BbsI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspEI, BspMI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeIII, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, HpyCH4III, I-CeuI, I-SceI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PspOMI, PvuI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AciI C|CGC 152, 385, 816
AflII C|TTAAG 558
AflIII A|CPuPyGT 370
AhdI GACNNN|NNGTC 687
AluI AG|CT 120, 379, 650, 703, 725
BanI G|GPyPuCC 85
BanII GPuGCPy|C 380
BbvCI CC|TCAGC 90, 119
BfaI C|TAG 468
BglII A|GATCT 615
BsaAI PyAC|GTPu 371
BsaBI GATNN|NNATC 282
BsaHI GPu|CGPyC 85, 750
BsaJI C|CNNGG 847
BsiHKAI G[AT]GC[AT]|C 380
BslI CCNNNNN|NNGG 402, 823
BsmI GAATGCN| 499
Bsp1286I G[GAT]GC[CAT]|C 380
BspHI T|CATGA 72
BspT107I(HgiCI) G|G[TC][AG]CC 85
BsrBI GAG|CGG 168
BsrI ACTGGN| 41, 365
BssKI |CCNGG 493, 955
BstAPI GCANNNN|NTGC 352
BstNI CC|[AT]GG 955
BstYI Pu|GATCPy 615
Cac8I GCN|NGC 716
DdeI C|TNAG 89, 118
DpnI GA-CH3|TC 199, 210, 614, 744, 962
DpnII |GATC 199, 210, 614, 744, 962
Fnu4HI GC|NGC 122, 134, 146, 152, 193, 258, 409
HaeII PuGCGC|Py 85
HhaI GCG|C 84
HinP1I G|CGC 84
HinfI G|ANTC 30, 282, 518, 590, 674, 795, 840
HpaII C|CGG 355, 412, 492, 575
Hpy188I TCN|GA 56, 202, 272, 610
HpyCH4IV A|CGT 240, 370, 390
HpyCH4V TG|CA 123, 344, 499
KasI G|GCGCC 85
MboI |GATC 199, 210, 614, 744, 962
MseI T|TAA 557, 900, 930
MslI CAPyNN|NNPuTG 161, 267
MspA1I C[AC]G|C[GT]G 121
MspI C|CGG 355, 412, 492, 575
MwoI GCNNNNN|NNGC 131, 143, 234, 343, 409
N.BstNBI GAGTCNNNN|N 679, 845
NarI GG|CGCC 85
NciI CC|[CG]GG 493
NlaIII CATG| 71, 104, 646, 697
NlaIV GGN|NCC 51, 85
NsiI ATGCA|T 500
PmlI CAC|GTG 371
PsiI TTA|TAA 66
PspGI |CC[AT]GG 955
PstI CTGCA|G 124
PvuII CAG|CTG 121
RsaI GT|AC 426
SacI GAGCT|C 380
Sau3AI |GATC 199, 210, 614, 744, 962
ScrFI CC|NGG 493, 955
SfcI C|TPuPyAG 124, 318
SfoI GGC|GCC 85
SmlI C|TPyPuAG 558, 684
Taqƒ¿I T|CGA 197
TfiI G|A[AT]TC 30, 282, 518, 590, 795
TseI G|C[AT]GC 122, 134, 146, 258, 409
Tsp509I |AATT 62, 944
TspRI NNCA[CG]TGNN| 264, 463


Click here to view TAIR data

>AT2G37590.1 length:993
ATGGTTTTCT CCTCCATCCA AGCCTATCTT GATTCATCCA ACTGGCAACA 
50
GGCTCCTCCG AGCAATTATA ATCATGACGG AACAGGCGCC TCAGCAAATG 
100
GAGGTCATGT TCTTCGTCCT CAGCTGCAGC CACAGCAGCA GCCACAGCAG 
150
CAGCCGCATC CTAATGGGAG CGGGGGCGGA GGTGGAGGTG GAGGCGGCTC 
200
GATCCGAGCA GGATCAATGG TGGACAGAGC AAGACAAGCA AACGTAGCCT 
250
TGCCAGAAGC AGCACTGAAA TGTCCGAGAT GCGAATCCAC CAACACCAAG 
300
TTCTGCTACT TCAACAACTA CAGCCTCACT CAACCACGCC ACTTCTGCAA 
350
GACCTGCCGG AGATACTGGA CACGTGGCGG AGCTCTCCGC AACGTCCCAG 
400
TCGGCGGTGG CTGCCGGAGA AACAGGCGTA CCAAAAGCAA CAGCAACAAC 
450
AACAATAACA GCACTGCTAC TAGCAATAAC ACCAGTTTCT CCTCCGGGAA 
500
TGCATCCACC ATCAGCACGA TTCTCTCCTC CCACTATGGA GGAAACCAAG 
550
AGAGTATCTT AAGCCAGATT TTGTCTCCGG CGAGGCTAAT GAATCCTACT 
600
TACAATCATC TCGGAGATCT CACAAGTAAT ACAAAAACAG ACAACAACAT 
650
GAGCTTGTTG AACTATGGAG GATTGAGTCA AGACTTGAGG TCAATCCACA 
700
TGGGAGCTTC TGGTGGCTCG CTTATGAGCT GTGTTGATGA ATGGAGATCG 
750
GCGTCTTATC ATCAGCAGTC AAGTATGGGC GGTGGGAACT TGGAGGATTC 
800
TTCTAATCCT AATCCATCCG CAAATGGGTT TTACTCTTTT GAGTCGCCGA 
850
GGATAACTTC AGCGTCAATC TCTTCTGCTT TAGCATCGCA GTTTTCTTCG 
900
GTTAAAGTTG AAGATAATCC TTACAAATGG GTTAATGTCA ATGGTAATTG 
950
CTCTTCCTGG AATGATCTTT CTGCTTTCGG CTCTTCTCGT TGA
1000

>AT2G37590.1 longest ORF length:330
MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ 
50
QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK 
100
FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN 
150
NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT 
200
YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS 
250
ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS 
300
VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR 
350