fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G37650 SCL9 GRAS family transcription factor (.1)

>AT2G37650.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SpeI
Name Recognition sequence Cut positions
BamHI G|GATCC 207
BglII A|GATCT 315, 839, 1593
EcoRI G|AATTC 171
EcoRV GAT|ATC 1600
HindIII A|AGCTT 926
PstI CTGCA|G 794, 1241
PvuII CAG|CTG 212, 1067, 1244
SmaI CCC|GGG 1468
StyI C|C[AT][AT]GG 2147
XbaI T|CTAGA 312
XhoI C|TCGAG 1174


Click here to view TAIR data

>AT2G37650.1 length:2157
ATGATTACTG AACCAAGTCT AACCGGGATT TCAGGTATGG TTAATCGGAA 
50
CCGTTTATCC GGTTTACCCG ATCAACCTTC TTCGCATAGC TTCACTCCGG 
100
TAACACTATA CGACGGTTTC AATTACAATC TCTCCTCCGA TCATATAAAC 
150
ACCGTTGTAG CAGCGCCGGA GAATTCAGTT TTTATCCGGG AAGAAGAAGA 
200
AGAAGAGGAT CCAGCTGATG ATTTCGATTT CTCTGACGCT GTTTTAGGAT 
250
ACATTAGTCA GATGTTGAAT GAGGAAGACA TGGATGATAA AGTCTGCATG 
300
CTTCAAGAGT CTCTAGATCT CGAAGCTGCT GAGAGATCGT TATACGAAGC 
350
TATTGGTAAG AAGTATCCTC CATCTCCAGA ACGAAACTTA GCTTTCGCTG 
400
AACGAAACAG CGAGAATCTT GACCGTGTGG TTCCAGGAAA CTACACTGGA 
450
GGAGATTGTA TAGGTTTTGG GAACGGTGGA ATCAAGCCTT TGAGTAGTGG 
500
TTTTACTTTG GATTTTCGAA ATCCTCAGAG TTGTTCTTCG ATTCTAAGTG 
550
TTCCACAATC TAATGGTTTA ATTACTATCT ACGGAGATGG AATTGATGAA 
600
TCGTCGAAGA ACAATCGGGA GAATCATCAA TCTGTTTGGT TGTTTAGGCG 
650
TGAGATTGAA GAAGCTAATA GGTTTAATCC TGAAGAAAAC GAGTTGATTG 
700
TGAATTTCAG AGAGGAGAAT TGTGTGAGCA AAGCAAGGAA GAACTCTAGC 
750
CGTGATGAGA TTTGTGTTGA AGAAGAGAGG AGTAGTAAAT TACCTGCAGT 
800
GTTTGGTGAG GATATTTTGA GGTCAGATGT TGTAGATAAG ATCTTGGTTC 
850
ATGTACCAGG AGGAGAGAGC ATGAAGGAGT TTAATGCGTT GCGTGACGTT 
900
TTGAAGAAAG GAGTGGAGAA GAAGAAAGCT TCAGATGCTC AAGGTGGGAA 
950
GAGACGAGCC AGAGGAAGAG GACGTGGAAG AGGAAGAGGA GGAGGAGGAG 
1000
GGCAAAATGG GAAAAAAGAA GTTGTGGATT TGAGAAGTTT ATTGATACAT 
1050
TGTGCTCAAG CTGTTGCAGC TGATGATCGT AGGTGTGCAG GTCAGTTGTT 
1100
AAAACAGATA AGATTGCATT CTACGCCGTT TGGTGATGGG AATCAGAGGT 
1150
TGGCTCATTG TTTTGCTAAT GGTCTCGAGG CGAGGTTAGC CGGTACTGGA 
1200
AGCCAGATTT ACAAAGGGAT TGTGAGTAAA CCGAGATCCG CTGCAGCTGT 
1250
GTTGAAGGCT CACCAGCTTT TTCTTGCGTG TTGTCCTTTT AGAAAGCTCT 
1300
CTTATTTCAT AACTAATAAG ACGATACGTG ATCTTGTTGG GAACTCTCAG 
1350
CGCGTTCATG TTATTGATTT TGGTATTCTT TACGGTTTCC AATGGCCAAC 
1400
TCTTATTCAC CGGTTTTCGA TGTATGGATC ACCGAAGGTT AGGATCACCG 
1450
GGATTGAGTT TCCGCAGCCC GGGTTTCGTC CGGCACAGCG GGTTGAAGAA 
1500
ACTGGTCAAA GGTTAGCAGC GTATGCCAAA CTCTTTGGGG TGCCATTTGA 
1550
GTATAAAGCA ATTGCTAAGA AGTGGGATGC AATTCAACTT GAAGATCTTG 
1600
ATATCGACAG GGATGAGATT ACTGTTGTTA ATTGCCTGTA CCGGGCTGAG 
1650
AATTTGCATG ATGAGTCAGT CAAAGTAGAA AGTTGTAGAG ACACTGTTCT 
1700
CAATTTGATC GGGAAGATCA ATCCTGATCT CTTTGTCTTT GGCATTGTGA 
1750
ATGGTGCATA CAACGCACCG TTTTTCGTAA CACGGTTTCG CGAAGCTCTA 
1800
TTTCATTTCT CCTCGATTTT TGACATGCTT GAGACAATTG TGCCACGAGA 
1850
AGACGAAGAG AGGATGTTCC TTGAGATGGA GGTCTTTGGG AGAGAGGCAC 
1900
TGAATGTGAT TGCTTGCGAA GGTTGGGAAA GAGTGGAGAG GCCTGAGACA 
1950
TACAAGCAGT GGCACGTACG GGCTATGAGG TCAGGGTTGG TGCAGGTTCC 
2000
ATTTGACCCA AGCATTATGA AGACATCGCT GCATAAGGTC CACACATTCT 
2050
ACCACAAGGA TTTTGTGATC GATCAAGATA ACCGGTGGCT CTTGCAAGGC 
2100
TGGAAGGGAA GAACTGTCAT GGCTCTTTCT GTTTGGAAAC CAGAGTCCAA 
2150
GGCTTGA
2200

>AT2G37650.1 longest ORF length:718
MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN 
50
TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM 
100
LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG 
150
GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE 
200
SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS 
250
RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV 
300
LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH 
350
CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG 
400
SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ 
450
RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE 
500
TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE 
550
NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL 
600
FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET 
650
YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG 
700
WKGRTVMALS VWKPESKA
750