|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G38090 | MYB-R | Duplicated homeodomain-like superfamily protein (.1) |
>AT2G38090.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PvuI, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 652, 778 |
| AciI | C|CGC | 357, 381, 651, 666 |
| AflIII | A|CPuPyGT | 779 |
| AhdI | GACNNN|NNGTC | 153 |
| AluI | AG|CT | 88, 216, 244, 496, 757 |
| AlwNI | CAGNNN|CTG | 758 |
| ApoI | Pu|AATTPy | 106 |
| AvaII | G|G[AT]CC | 154 |
| BamHI | G|GATCC | 379 |
| BclI | T|GATCA | 200 |
| BfaI | C|TAG | 38 |
| BsaHI | GPu|CGPyC | 813 |
| BsaJI | C|CNNGG | 264, 424, 653 |
| BslI | CCNNNNN|NNGG | 151, 264, 696 |
| BsrI | ACTGGN| | 53 |
| BssKI | |CCNGG | 177, 264 |
| BstBI | TT|CGAA | 109, 865 |
| BstNI | CC|[AT]GG | 264 |
| BstUI | CG|CG | 652, 778 |
| BstYI | Pu|GATCPy | 379 |
| BtgI | C|CPuPyGG | 424, 653 |
| Cac8I | GCN|NGC | 316, 683 |
| DpnI | GA-CH3|TC | 199, 378 |
| DpnII | |GATC | 199, 378 |
| EcoNI | CCTNN|NNNAGG | 696 |
| EcoRV | GAT|ATC | 610 |
| Fnu4HI | GC|NGC | 165, 360, 384, 645, 651, 756 |
| HincII | GTPy|PuAC | 622 |
| HinfI | G|ANTC | 10, 160, 279, 633, 867 |
| HpaII | C|CGG | 177, 363 |
| Hpy188I | TCN|GA | 190, 276, 452, 720, 786, 848 |
| Hpy99I | CG[AT]CG| | 308, 811 |
| HpyCH4III | ACN|GT | 186, 343, 618 |
| HpyCH4IV | A|CGT | 228 |
| HpyCH4V | TG|CA | 646 |
| MboI | |GATC | 199, 378 |
| MluI | A|CGCGT | 779 |
| MseI | T|TAA | 333 |
| MslI | CAPyNN|NNPuTG | 723 |
| MspA1I | C[AC]G|C[GT]G | 89, 653, 709, 758 |
| MspI | C|CGG | 177, 363 |
| MwoI | GCNNNNN|NNGC | 393, 543, 598, 651 |
| N.BstNBI | GAGTCNNNN|N | 165 |
| NciI | CC|[CG]GG | 177 |
| NcoI | C|CATGG | 424 |
| NlaIII | CATG| | 169, 337, 401, 423, 605, 820 |
| NlaIV | GGN|NCC | 76, 379 |
| PflMI | CCANNNN|NTGG | 264 |
| PsiI | TTA|TAA | 768 |
| PspGI | |CC[AT]GG | 264 |
| PstI | CTGCA|G | 647 |
| PvuII | CAG|CTG | 89, 758 |
| RsaI | GT|AC | 871 |
| SacII | CCGC|GG | 653 |
| Sau3AI | |GATC | 199, 378 |
| Sau96I | G|GNCC | 154 |
| ScrFI | CC|NGG | 177, 264 |
| SfcI | C|TPuPyAG | 647 |
| SmlI | C|TPyPuAG | 220 |
| StyI | C|C[AT][AT]GG | 424 |
| Taqƒ¿I | T|CGA | 12, 108, 240, 809, 864 |
| TfiI | G|A[AT]TC | 10, 279, 867 |
| TseI | G|C[AT]GC | 165, 645, 756 |
| Tsp45I | |GT[CG]AC | 23, 510, 541 |
| Tsp509I | |AATT | 105, 447, 861 |
| XbaI | T|CTAGA | 39 |
| XmnI | GAANN|NNTTC | 807 |
Click here to view TAIR data
>AT2G38090.1 length:897
ATGAACAGAG GAATCGAAGT TATGTCACCA GCAACATATC TAGAGACATC | 50 |
AAACTGGTTG TTTCAAGAAA ACAGAGGAAC CAAATGGACA GCTGAAGAAA | 100 |
ACAAGAAATT CGAAAACGCT TTAGCCTTTT ACGACAAAGA TACTCCCGAC | 150 |
AGATGGTCCA GAGTCGCTGC CATGCTTCCC GGTAAAACAG TCGGAGATGT | 200 |
GATCAAACAA TACAGAGAGC TTGAGGAAGA CGTTAGCGAC ATCGAAGCTG | 250 |
GTCTTATACC AATCCCTGGT TACGCCTCTG ATTCATTCAC ACTTGATTGG | 300 |
GGTGGCTACG ACGGAGCAAG CGGTAACAAT GGGTTTAACA TGAACGGTTA | 350 |
CTACTTTTCC GCCGCCGGAG GAAAGAGAGG ATCCGCCGCA CGAACGGCGG | 400 |
AGCATGAGAG GAAGAAAGGT GTTCCATGGA CAGAAGAAGA ACACAGACAA | 450 |
TTTCTGATGG GTTTGAAGAA ATATGGAAAA GGAGATTGGA GAAACATAGC | 500 |
TCGTAACTTT GTGACCACAA GAACGCCAAC GCAAGTCGCA AGTCACGCTC | 550 |
AAAAGTATTT CATACGGCAA GTCAATGGTG GCAAAGACAA ACGCCGTTCA | 600 |
AGCATCCATG ATATCACAAC CGTCAACATC CCCGACTCTC CTGACGCTGC | 650 |
AGCCGCGGAT AACGCAACCG CAAACGCACC TTGCTCGCCA CCTTCCGTAG | 700 |
GAGGAAACCA GCGGGAGACA TCGGAGTGGG AAGGTCAAAC ACTATACGAT | 750 |
GAAACAGCAG CTGCGTTTTA TAATCAAAAC GCGTTTTCAG AAACGCTACT | 800 |
TGGAATGTCT TCGACGCCCT ACATGGCAAA ACTTCAGGAG CAGAGTTTTC | 850 |
TGAACGCATC GCAATTCGAA TCGTACAATG CGTATCTCCA AATGTAG | 900 |
>AT2G38090.1 longest ORF length:298
MNRGIEVMSP ATYLETSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD | 50 |
RWSRVAAMLP GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW | 100 |
GGYDGASGNN GFNMNGYYFS AAGGKRGSAA RTAEHERKKG VPWTEEEHRQ | 150 |
FLMGLKKYGK GDWRNIARNF VTTRTPTQVA SHAQKYFIRQ VNGGKDKRRS | 200 |
SIHDITTVNI PDSPDAAAAD NATANAPCSP PSVGGNQRET SEWEGQTLYD | 250 |
ETAAAFYNQN AFSETLLGMS STPYMAKLQE QSFLNASQFE SYNAYLQM | 300 |