Locus |
Common name |
Short description |
AT2G39250 |
SNZ |
SCHNARCHZAPFEN, Integrase-type DNA-binding superfamily protein (.1) |
>AT2G39250.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, StyI, XbaI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
478, 765, 863 |
HindIII
| A|AGCTT |
576 |
NdeI
| CA|TATG |
613 |
SalI
| G|TCGAC |
27, 293 |
XhoI
| C|TCGAG |
748 |
Click here to view TAIR data
>AT2G39250.1 length:978
ATGTTGGACC TCAACCTCGG AATCTTGTCG ACACACAACG AAGATGAAGA | 50 |
TTGCAAAGTA CCAACTTCCA TCTTCATTCA AGAAGAAGAT TCCATTAATC | 100 |
CCTCAAACGA CAACTTGTCT TTGATTACAT TTGGAATCCT TAAACGAAAC | 150 |
GTCGAAATCC TTCCTCCTCC CCCTCCTCCT CCTCCTCCTC CTCCTCCTTC | 200 |
GGAAAATGAA CTCTCCGGCC CCGGAAATGA GTGGTTGGAT CTTTCGTCGA | 250 |
TGCAAAGAAA TAAACAAGAA ACGTTGGTGA TGAAGAAAAA AAGTCGACGT | 300 |
GGCCCAAGAT CAAGAAGCTC TCATTATCGT GGCGTTACCT TTTACCGTCG | 350 |
AACCGGCCGT TGGGAATCTC ATATTTGGGA CTGTGGAAAA CAAGTTTATT | 400 |
TGGGTGGTTT CGACACAGCC TACACAGCCG CAAGAGCGTA CGACCGAGCT | 450 |
GCTATCAGAT TCCGGGGACT CCAAGCAGAT ATCAACTTTA TCGTGGATGA | 500 |
TTACAAACAA GACATTGAAA AGATGAAGAA TTTAAGCAAA GAAGAGTTTG | 550 |
TGCAATCTCT TAGACGAGCG AGTGCAAGCT TAGCAAGAGG AGGTTCTAAA | 600 |
TACAAAAACA CCCATATGAG AAATGATCAC ATCCATCTCT TCCAAAACAG | 650 |
GGGATTGAAT GCAGCAGCAG CAAAATGCAA TGAGATAAGA AAGATGGAAG | 700 |
GGGATATTAA GTTGGGTGCC CATAGTAAAG GAAATGAGCA CAACGATCTC | 750 |
GAGCTAAGTC TTGGGATATC TTCATCGTCA AAAGTTAGAA TTTTGGAACC | 800 |
AGCAGATTAT TACATGGGTT TGAATCGATC GGTGACGAGT TTGCATGGGA | 850 |
AGCCGTTGCC GGGATATCTA CCGATCACAG AAATTAAACC GTTAAAGACA | 900 |
GTTGTAGCAT CATCAGGATT CCCTTTCATT ACCATGATCA ATCCTTCTTC | 950 |
TTTGTCCTTA TCTTGTTTTG ATCCATGA | 1000 |
>AT2G39250.1 longest ORF length:325
MLDLNLGILS THNEDEDCKV PTSIFIQEED SINPSNDNLS LITFGILKRN | 50 |
VEILPPPPPP PPPPPPSENE LSGPGNEWLD LSSMQRNKQE TLVMKKKSRR | 100 |
GPRSRSSHYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YTAARAYDRA | 150 |
AIRFRGLQAD INFIVDDYKQ DIEKMKNLSK EEFVQSLRRA SASLARGGSK | 200 |
YKNTHMRNDH IHLFQNRGLN AAAAKCNEIR KMEGDIKLGA HSKGNEHNDL | 250 |
ELSLGISSSS KVRILEPADY YMGLNRSVTS LHGKPLPGYL PITEIKPLKT | 300 |
VVASSGFPFI TMINPSSLSL SCFDP | 350 |
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