fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G39250 SNZ SCHNARCHZAPFEN, Integrase-type DNA-binding superfamily protein (.1)

>AT2G39250.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 478, 765, 863
HindIII A|AGCTT 576
NdeI CA|TATG 613
SalI G|TCGAC 27, 293
XhoI C|TCGAG 748


Click here to view TAIR data

>AT2G39250.1 length:978
ATGTTGGACC TCAACCTCGG AATCTTGTCG ACACACAACG AAGATGAAGA 
50
TTGCAAAGTA CCAACTTCCA TCTTCATTCA AGAAGAAGAT TCCATTAATC 
100
CCTCAAACGA CAACTTGTCT TTGATTACAT TTGGAATCCT TAAACGAAAC 
150
GTCGAAATCC TTCCTCCTCC CCCTCCTCCT CCTCCTCCTC CTCCTCCTTC 
200
GGAAAATGAA CTCTCCGGCC CCGGAAATGA GTGGTTGGAT CTTTCGTCGA 
250
TGCAAAGAAA TAAACAAGAA ACGTTGGTGA TGAAGAAAAA AAGTCGACGT 
300
GGCCCAAGAT CAAGAAGCTC TCATTATCGT GGCGTTACCT TTTACCGTCG 
350
AACCGGCCGT TGGGAATCTC ATATTTGGGA CTGTGGAAAA CAAGTTTATT 
400
TGGGTGGTTT CGACACAGCC TACACAGCCG CAAGAGCGTA CGACCGAGCT 
450
GCTATCAGAT TCCGGGGACT CCAAGCAGAT ATCAACTTTA TCGTGGATGA 
500
TTACAAACAA GACATTGAAA AGATGAAGAA TTTAAGCAAA GAAGAGTTTG 
550
TGCAATCTCT TAGACGAGCG AGTGCAAGCT TAGCAAGAGG AGGTTCTAAA 
600
TACAAAAACA CCCATATGAG AAATGATCAC ATCCATCTCT TCCAAAACAG 
650
GGGATTGAAT GCAGCAGCAG CAAAATGCAA TGAGATAAGA AAGATGGAAG 
700
GGGATATTAA GTTGGGTGCC CATAGTAAAG GAAATGAGCA CAACGATCTC 
750
GAGCTAAGTC TTGGGATATC TTCATCGTCA AAAGTTAGAA TTTTGGAACC 
800
AGCAGATTAT TACATGGGTT TGAATCGATC GGTGACGAGT TTGCATGGGA 
850
AGCCGTTGCC GGGATATCTA CCGATCACAG AAATTAAACC GTTAAAGACA 
900
GTTGTAGCAT CATCAGGATT CCCTTTCATT ACCATGATCA ATCCTTCTTC 
950
TTTGTCCTTA TCTTGTTTTG ATCCATGA
1000

>AT2G39250.1 longest ORF length:325
MLDLNLGILS THNEDEDCKV PTSIFIQEED SINPSNDNLS LITFGILKRN 
50
VEILPPPPPP PPPPPPSENE LSGPGNEWLD LSSMQRNKQE TLVMKKKSRR 
100
GPRSRSSHYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YTAARAYDRA 
150
AIRFRGLQAD INFIVDDYKQ DIEKMKNLSK EEFVQSLRRA SASLARGGSK 
200
YKNTHMRNDH IHLFQNRGLN AAAAKCNEIR KMEGDIKLGA HSKGNEHNDL 
250
ELSLGISSSS KVRILEPADY YMGLNRSVTS LHGKPLPGYL PITEIKPLKT 
300
VVASSGFPFI TMINPSSLSL SCFDP
350