fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G39880 ATMYB25 myb domain protein 25 (.1)

>AT2G39880.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 531
NdeI CA|TATG 331
NheI G|CTAGC 105
PstI CTGCA|G 902
SacI GAGCT|C 94
StyI C|C[AT][AT]GG 154


Click here to view TAIR data

>AT2G39880.1 length:1104
ATGAACGGAG AAATCTCTCG TCCGCCGGAG CTAATATCGT CCCGGAATCC 
50
TTGCAAGAGT TTTGAAAATG CAATACACAA AGCAGTTGAG GCAGAGCTCG 
100
CCGAGCTAGC GAAAAGCGAC GCGAACGGCG GCGGAAAGAG TAAAGTGAAA 
150
GGACCTTGGT TGCCGGAGCA AGATGAGGCT CTCACGAGGC TTGTGAAAAT 
200
GTGTGGGCCG AGGAACTGGA ATCTAATCTC CCGTGGAATC CCAGGTCGCT 
250
CTGGTAAATC TTGCCGATTA CGTTGGTGTA ATCAGCTCGA TCCTATCCTC 
300
AAACGAAAAC CTTTCTCTGA TGAGGAGGAG CATATGATAA TGTCTGCACA 
350
GGCGGTTCTT GGGAACAAAT GGTCTGTGAT TGCTAAACTC TTACCTGGGA 
400
GAACAGATAA TGCCATTAAG AATCATTGGA ACTCTAATCT TAGACGTAAA 
450
CCAGCAGAAC AATGGAAGAT TCCTCTATTG ATGTCTAATA CAGAGATAGT 
500
ATATCAACTG TATCCATCAA TGGTCAGAAG GATATCAAAC GCATCCCCCA 
550
AAGAACATCT ACCTCAAGAA GAAGAAACCG GTGTATTAAG TGATGATAAA 
600
ATGGATGATG AAGCAAAGGA GCCTCCTCGG GAGCAAAATA GTAAAACTGG 
650
TGTTTATCGT CCAGTGGCTC GAATGGGTGC TTTCAGTGTC TGTAAACCAG 
700
GATACATGGC TCCATGTGAG GGACCTTTGG TTCAAGCATC AAGACCTGAC 
750
TCATTGGCTG GTAAATTTCT TCAGTCTCTT TGTTATGATC CTATTATCCC 
800
TTCAAAATGC GGTCACGGTT GCTGCAACCA TCAAGACAGC ACAACACTGT 
850
CATCATCGTC GGTGCTGGGA TCAGAGTTTG TGGATTATGA GGAACATTCT 
900
TCTGCAGAGT TAGATAAAGA ATTGATCTCT ATATCAAATG ACCTGAACAA 
950
TACTGCTTGG ATTAGGAGTG GGAAGGAAGC TGAACAGAGT TTGAAGGCTG 
1000
ATGATCAGTT TCGTCGTGAG TATGCTCACT CGAAATTTAG TGGAATGGTA 
1050
AACAATGGTG TATCAAGTCA GATGGTGAGA CAAGATTTAA GGGCTTTGAG 
1100
CTAA
1150

>AT2G39880.1 longest ORF length:367
MNGEISRPPE LISSRNPCKS FENAIHKAVE AELAELAKSD ANGGGKSKVK 
50
GPWLPEQDEA LTRLVKMCGP RNWNLISRGI PGRSGKSCRL RWCNQLDPIL 
100
KRKPFSDEEE HMIMSAQAVL GNKWSVIAKL LPGRTDNAIK NHWNSNLRRK 
150
PAEQWKIPLL MSNTEIVYQL YPSMVRRISN ASPKEHLPQE EETGVLSDDK 
200
MDDEAKEPPR EQNSKTGVYR PVARMGAFSV CKPGYMAPCE GPLVQASRPD 
250
SLAGKFLQSL CYDPIIPSKC GHGCCNHQDS TTLSSSSVLG SEFVDYEEHS 
300
SAELDKELIS ISNDLNNTAW IRSGKEAEQS LKADDQFRRE YAHSKFSGMV 
350
NNGVSSQMVR QDLRALS
400