fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G39900 WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1)

>AT2G39900.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SmaI, SpeI, StyI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 426
PstI CTGCA|G 572
PvuII CAG|CTG 71, 566, 575
SalI G|TCGAC 287
XbaI T|CTAGA 450


Click here to view TAIR data

>AT2G39900.1 length:603
ATGTCGTTTA CAGGAACTCA GCAGAAATGC AGGGCGTGCG AGAAGACAGT 
50
GTACCCTGTG GAGCTTCTCT CAGCTGATGG AATCTCTTAT CACAAGGCTT 
100
GCTTCAAATG CTCTCACTGC AAAAGCAGAC TTCAACTGAG CAATTATTCA 
150
TCAATGGAAG GAGTGGTGTA TTGTAGGCCT CATTTTGAGC AGCTTTTCAA 
200
GGAGTCTGGT AGTTTCAGCA AGAACTTTCA GTCACCTGCA AAGCCATTGA 
250
CTGATAAGCC AACCCCGGAG CTGAATAGGA CACCTAGTCG ACTTGCTGGT 
300
ATGTTCTCTG GAACGCAAGA CAAATGCGCT ACTTGCACTA AAACCGTGTA 
350
TCCTATCGAA AAGGTAACTG TGGAAAGCCA GTGTTACCAT AAATCTTGCT 
400
TCAAGTGTTC TCATGGAGGC TGTCCGATAT CTCCATCGAA CTATGCAGCT 
450
CTAGAGGGAA TATTGTACTG CAAGCACCAT TTCGCTCAGC TTTTCAAGGA 
500
GAAAGGAAGT TACAATCATC TCATCAAATC TGCTTCCATC AAACGCGCTA 
550
CTGCTGCTGC TACCGCAGCT GCTGCAGCTG TAGCAGCCGT TCCCGAATCT 
600
TGA
650

>AT2G39900.1 longest ORF length:200
MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS 
50
SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG 
100
MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA 
150
LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES 
200