fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G40260 Homeodomain-like superfamily protein (.1)

>AT2G40260.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, HpaI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 214
BglII A|GATCT 130, 572
EcoRI G|AATTC 773
EcoRV GAT|ATC 659, 1096
HindIII A|AGCTT 331, 1008
KpnI GGTAC|C 1023
SacI GAGCT|C 268
StyI C|C[AT][AT]GG 586


Click here to view TAIR data

>AT2G40260.1 length:1233
ATGAGATCAA GCAGCCAAAA TTCTGAAAAC TCCAAGACTT GTCTATCTAA 
50
CAACATCAAA GCAACCACCA AGAATGAAGA AGATAAAGAT GAAGAGGATG 
100
ATGAAGAAGG CGAAGAGGAT GAAGAAGAGA GATCTGGAGA TCAGAGCCCA 
150
TCTAGCAATA GCTATGAGGA AGAGAGTGGG AGTCACCACC ATGATCAGAA 
200
CAAGAAGAAT GGAGGATCCG TGAGGCCGTA CAACCGCTCA AAGACTCCGA 
250
GGCTGCGATG GACGCCGGAG CTCCATATTT GCTTTCTTCA AGCTGTGGAG 
300
AGATTGGGTG GCCCAGATAG AGCAACACCG AAGCTTGTTC TCCAATTGAT 
350
GAACGTCAAG GGGCTAAGTA TTGCCCATGT TAAGAGTCAT CTTCAGATGT 
400
ACAGAAGCAA GAAGACCGAT GAGCCTAATG AAGGAGATCA AGGATTTTCG 
450
TTTGAACACG GAGCTGGTTA CACTTACAAC CTTAGCCAAC TTCCAATGCT 
500
ACAAAGTTTT GATCAAAGGC CTTCTTCTAG TTTAGGATAT GGTGGTGGTT 
550
CGTGGACTGA CCACAGACGA CAGATCTACC GTAGCCCTTG GAGAGGATTA 
600
ACGACACGAG AAAATACAAG AACAAGACAA ACAATGTTTA GCTCACAGCC 
650
TGGTGAGAGA TATCACGGAG TTAGCAATAG TATTCTTAAC GATAAGAACA 
700
AAACTATTTC ATTTCGAATC AATTCTCATG AAGGGGTTCA TGATAACAAT 
750
GGAGTAGCTG GAGCTGTTCC AAGAATTCAT AGAAGTTTTC TTGAAGGTAT 
800
GAAAACGTTT AACAAATCAT GGGGACAGAG CCTCTCTTCC AATCTTAAGT 
850
CCTCCACCGC AACAATACCA CAAGATCATA TTGCTACAAC GCTAAATTCT 
900
TATCAATGGG AGAATGCTGG AGTGGCAGAA GGATCAGAGA ATGTTTTGAA 
950
GAGGAAGAGG TTATTATTTT CTGATGACTG CAATAAGTCA GACCAAGATT 
1000
TGGATCTAAG CTTGTCCCTT AAGGTACCTC GGACACACGA CAATCTTGGA 
1050
GAATGCTTGT TAGAAGATGA AGTAAAAGAA CATGATGATC ATCAAGATAT 
1100
CAAGAGTTTG TCTCTTTCGT TATCATCTTC AGGTTCATCA AAACTCGACC 
1150
GAACCATTAG GAAAGAAGAT CAAACTGATC ACAAAAAGAG AAAGATTTCG 
1200
GTCTTGGCAA GTCCCCTTGA TCTCACTCTG TGA
1250

>AT2G40260.1 longest ORF length:410
MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP 
50
SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE 
100
RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS 
150
FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL 
200
TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN 
250
GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS 
300
YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG 
350
ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS 
400
VLASPLDLTL 
450