|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G40340 | AtERF48, DREB2C | Integrase-type DNA-binding superfamily protein (.1) |
>AT2G40340.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| NdeI | CA|TATG | 311 |
Click here to view TAIR data
>AT2G40340.1 length:1026
ATGCCGTCGG AGATTGTTGA CAGGAAAAGG AAGTCTCGTG GAACACGAGA | 50 |
TGTAGCTGAG ATTCTAAGGC AATGGAGAGA GTACAATGAG CAGATTGAGG | 100 |
CAGAATCTTG TATCGATGGT GGTGGTCCAA AATCAATCCG AAAGCCTCCT | 150 |
CCAAAAGGTT CGAGGAAGGG TTGTATGAAA GGTAAAGGTG GACCTGAAAA | 200 |
CGGGATTTGT GACTATAGAG GAGTTAGACA GAGGAGATGG GGTAAATGGG | 250 |
TTGCTGAGAT CCGTGAGCCA GACGGAGGTG CTAGGTTGTG GCTCGGTACT | 300 |
TTCTCCAGTT CATATGAAGC TGCATTGGCT TATGACGAGG CGGCCAAAGC | 350 |
TATATATGGT CAGTCTGCCA GACTCAATCT TCCCGAGATC ACAAATCGCT | 400 |
CTTCTTCGAC TGCTGCCACT GCCACTGTGT CAGGCTCGGT TACTGCATTT | 450 |
TCTGATGAAT CTGAAGTTTG TGCACGTGAG GATACAAATG CAAGTTCAGG | 500 |
TTTTGGTCAG GTGAAACTAG AGGATTGTAG CGATGAATAT GTTCTCTTAG | 550 |
ATAGTTCTCA GTGTATTAAA GAGGAGCTGA AAGGAAAAGA GGAAGTGAGG | 600 |
GAAGAACATA ACTTGGCTGT TGGTTTTGGA ATTGGACAGG ACTCGAAAAG | 650 |
GGAGACTTTG GATGCTTGGT TGATGGGAAA TGGCAATGAA CAAGAACCAT | 700 |
TGGAGTTTGG TGTGGATGAA ACGTTTGATA TTAATGAGCT ATTGGGTATA | 750 |
TTAAACGACA ACAATGTGTC TGGTCAAGAG ACAATGCAGT ATCAAGTGGA | 800 |
TAGACACCCA AATTTCAGTT ACCAAACGCA GTTTCCAAAT TCTAACTTGC | 850 |
TCGGGAGCCT CAACCCTATG GAGATTGCTC AACCAGGAGT TGATTATGGA | 900 |
TGTCCTTATG TGCAGCCCAG TGATATGGAG AACTATGGTA TTGATTTAGA | 950 |
CCATCGCAGG TTCAATGATC TTGACATACA GGACTTGGAT TTTGGAGGAG | 1000 |
ACAAAGATGT TCATGGATCT ACATAA | 1050 |
>AT2G40340.1 longest ORF length:341
MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP | 50 |
PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT | 100 |
FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF | 150 |
SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR | 200 |
EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI | 250 |
LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG | 300 |
CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T | 350 |