fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G40470 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1)

>AT2G40470.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, Hpy99I, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, Taqƒ¿I, TliI, Tsp45I, TspRI, Tth111I, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 301
AciI C|CGC 300
AflII C|TTAAG 436
AluI AG|CT 147, 244, 373, 394, 408, 454
AvaII G|G[AT]CC 102
BanII GPuGCPy|C 409
BfaI C|TAG 246
BsaWI [AT]|CCGG[AT] 345
BsiEI CGPuPy|CG 416
BsiHKAI G[AT]GC[AT]|C 167, 409
BslI CCNNNNN|NNGG 99, 351
Bsp1286I G[GAT]GC[CAT]|C 167, 409
BssKI |CCNGG 108
BstF5I GGATGNN| 356
BstUI CG|CG 301
BstYI Pu|GATCPy 342, 424
Cac8I GCN|NGC 142
DdeI C|TNAG 280, 336, 371, 629
DpnI GA-CH3|TC 40, 341, 423, 469
DpnII |GATC 40, 341, 423, 469
EaeI Py|GGCCPu 416
EagI C|GGCCG 416
EcoO109I PuG|GNCCPy 103
Fnu4HI GC|NGC 138, 300
HaeIII GG|CC 63, 415
HhaI GCG|C 154
HinP1I G|CGC 154
HindIII A|AGCTT 148, 395
HinfI G|ANTC 431
HpaII C|CGG 108, 344, 495, 510
Hpy188I TCN|GA 426
HpyCH4IV A|CGT 252, 327
HpyCH4V TG|CA 143, 356, 529
MboI |GATC 40, 341, 423, 469
MseI T|TAA 435, 670
MspI C|CGG 108, 344, 495, 510
MwoI GCNNNNN|NNGC 300, 372, 402
NciI CC|[CG]GG 108
NlaIII CATG| 358
NlaIV GGN|NCC 102, 112, 364
NsiI ATGCA|T 357
PpuMI PuG|G[AT]CCPy 103
PshAI GACNN|NNGTC 96
RsaI GT|AC 275, 349, 439, 473
SacI GAGCT|C 409
Sau3AI |GATC 40, 341, 423, 469
Sau96I G|GNCC 102
ScrFI CC|NGG 108
SmlI C|TPyPuAG 170, 436
TfiI G|A[AT]TC 431
TseI G|C[AT]GC 138
Tsp509I |AATT 82
XcmI CCANNNNN|NNNNTGG 240, 269


Click here to view TAIR data

>AT2G40470.1 length:675
ATGTCAAGAG AAAGGGAGAG ATTTGAAGAG ATAGGGAAGA AGATCAAAAG 
50
AGAAGCAGAT GCTTGGCCTC ATCAAATGGC TGGAATTAGA AGACCAATGT 
100
CGGGTCCTCC CGGAACCCTC AATACCATTA CGCCTTGTGC TGCCTGCAAG 
150
CTTTTGCGCC GTAGATGTGC TCAAGAATGT CCCTTTTCGC CATATTTCTC 
200
CCCACACGAG CCTCATAAGT TCGCTTCCGT CCACAAAGTC TTTGGAGCTA 
250
GTAACGTCTC CAAGATGCTA ATGGAAGTAC CTGAGAGCCA GAGAGCAGAT 
300
GCCGCGAATA GCCTTGTGTA TGAAGCAAAC GTGAGGCTAA GAGATCCGGT 
350
GTACGGATGC ATGGGAGCCA TCTCAGCTCT ACAACAACAA GTCCAAGCTT 
400
TACAAGCCGA GCTCACGGCC GTAAGATCCG AGATTCTTAA GTACAAGCAA 
450
CGAGAAGCTG TCGCCACTTT GATCGTACCT TCCAACTCCC AAGTTGCCGG 
500
ATTTCACAAC TCCGGCGGTG TTTCCGTCAT TGCACCACCA CCACAAAGAC 
550
CAACAACTCC ACCACAACCT ACAACGGCTC ATCCTCCTTC TCCATCTTCT 
600
TGTGTTTTCT CTCAACCAAC CACAAGAGAC TTAGAATACG GCAACATTGA 
650
AAGTGAGAAC AACTACTTCG GTTAA
700

>AT2G40470.1 longest ORF length:224
MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK 
50
LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD 
100
AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ 
150
REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS 
200
CVFSQPTTRD LEYGNIESEN NYFG
250