fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G40620 AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1)

>AT2G40620.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 6, 184, 232, 238, 244
BglII A|GATCT 141
EcoRI G|AATTC 327
HindIII A|AGCTT 634
PvuII CAG|CTG 1038
SacI GAGCT|C 523, 628
SalI G|TCGAC 439
StyI C|C[AT][AT]GG 277
XhoI C|TCGAG 526


Click here to view TAIR data

>AT2G40620.1 length:1104
ATGGAGGATC CTTCTAACCC ACAACCAAAC CAGAGCAATC TCTCGCAATG 
50
CCCGCCTTTA GCCACAGCTC CGACACCTGC GCCAGTTCGT GGTCCGTACC 
100
ACCGGAGAGC ACATTCGGAG GTCCAATTCC GTCTCCCTGA AGATCTGGAT 
150
CTCTCTGAAC CATTCGGAGG ATTCGATGAG CTTGGATCCG AAGATGATCT 
200
CTTTTGCTCA TACATGGACA TTGAGAAACT TGGATCCGGA TCCGGATCCG 
250
CATCCGATTC GGCTGGTCCT TCTGCTCCTA GGTCTGATAA CCCGTTTTCC 
300
GCTGAGAATG GAGGTGCGGA GGCTGGGAAT TCGAGACCTC GACACAGGCA 
350
TAGCCTCTCC GTTGATGGCT CTTCGACTTT GGAGTCAATT GAGGCTAAGA 
400
AAGCTATGGC TCCTGATAAG CTCGCTGAGC TTTGGGTCGT CGACCCTAAA 
450
AGAGCTAAAA GGATAATTGC TAATCGACAG TCTGCTGCTC GTTCGAAAGA 
500
GAGGAAGGCT CGGTATATCT TGGAGCTCGA GAGGAAAGTT CAGACCTTGC 
550
AAACTGAAGC TACTACCCTT TCAGCACAGT TGTCTTTGTT CCAGAGAGAC 
600
ACAACTGGTT TGTCATCTGA GAATACAGAG CTCAAGCTTC GTTTACAGGT 
650
CATGGAACAA CAAGCTAAGT TGCGAGATGC ACTGAACGAG CAACTGAAAA 
700
AGGAAGTTGA GAGGCTGAAA TTCGCCACGG GAGAAGTCTC ACCCGCGGAT 
750
GCTTATAACC TCGGAATGGC ACACATGCAA TATCAGCAAC AACCACAACA 
800
ATCCTTCTTT CAACATCATC ATCAGCAACA AACCGATGCT CAAAACCTGC 
850
AACAAATGAC TCATCAGTTT CATCTCTTCC AGCCTAACAA CAACCAGAAC 
900
CAATCTTCTC GCACAAACCC TCCCACCGCT CATCAGCTTA TGCATCACGC 
950
TACTTCTAAT GCCCCGGCTC AATCTCATTC CTATTCAGAG GCAATGCATG 
1000
AAGACCATCT TGGCCGGTTA CAGGGGCTTG ACATTAGCAG CTGTGGCAGA 
1050
GGCTCAAACT TTGGTAGGTC TGACACCGTC AGTGAAAGCA GCAGCACTAT 
1100
GTGA
1150

>AT2G40620.1 longest ORF length:367
MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD 
50
LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS 
100
AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK 
150
RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD 
200
TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD 
250
AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN 
300
QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR 
350
GSNFGRSDTV SESSSTM
400