fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G41710 Integrase-type DNA-binding superfamily protein (.1.2.3)

>AT2G41710.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1149, 1195
NdeI CA|TATG 323
PvuII CAG|CTG 1233
SacI GAGCT|C 72
StyI C|C[AT][AT]GG 819


Click here to view TAIR data

>AT2G41710.1 length:1272
ATGGCGTCGG TGTCGTCGTC GGATCAAGGA CCTAAGACAG AAGCAGGATG 
50
TAGCGGCGGA GGAGGAGGAG AGAGCTCGGA GACAGTGGCG GCGAGTGATC 
100
AGATGTTGTT GTATAGAGGT TTTAAGAAGG CGAAGAAGGA GAGAGGTTGT 
150
ACAGCTAAGG AGCGTATTAG TAAAATGCCT CCGTGCACTG CTGGGAAAAG 
200
GAGTTCCATA TACCGGGGAG TCACCAGACA TAGATGGACA GGTCGTTATG 
250
AAGCTCACCT TTGGGATAAG AGTACCTGGA ACCAAAACCA GAACAAGAAG 
300
GGAAAACAAG TTTATCTAGG AGCATATGAT GATGAAGAGG CTGCTGCTAG 
350
AGCTTACGAC CTTGCTGCCT TAAAATATTG GGGTCCTGGG ACACTTATAA 
400
ATTTTCCGGT GACTGATTAT ACCAGGGATT TAGAAGAAAT GCAAAATCTC 
450
TCAAGGGAAG AATACCTTGC ATCTTTACGT AGAAAAAGCA GCGGTTTCTC 
500
TAGGGGAATA GCGAAATATC GTGGACTTCA AAGCCGATGG GACGCATCAG 
550
CCAGTCGTAT GCCTGGACCT GAATACTTCA GTAACATTCA TTACGGGGCA 
600
GGTGATGATC GTGGAACAGA AGGTGACTTT CTAGGTAGCT TTTGTCTGGA 
650
AAGAAAGATT GATCTAACAG GATACATAAA GTGGTGGGGA GCCAACAAGA 
700
ACCGTCAACC AGAATCTTCA TCAAAAGCAT CAGAGGATGC AAACGTCGAA 
750
GATGCTGGTA CTGAGCTTAA AACACTGGAA CACACATCCC ATGCAACAGA 
800
ACCATACAAG GCGCCAAACC TTGGCGTCCT TTGTGGAACT CAGAGAAAAG 
850
AAAAAGAAAT ATCATCACCA TCAAGCTCTT CTGCTTTAAG CATCTTGTCT 
900
CAGTCGCCTG CCTTCAAGAG CCTAGAGGAG AAAGTGTTGA AGATCCAAGA 
950
AAGCTGCAAT AATGAAAACG ATGAGAATGC AAACCGTAAC ATCATCAATA 
1000
TGGAGAAGAA TAACGGCAAG GCAATAGAGA AACCAGTTGT GAGTCATGGA 
1050
GTTGCTTTAG GCGGTGCTGC TGCTTTGTCT CTTCAGAAAA GCATGTACCC 
1100
ACTTACCTCT CTCTTAACGG CTCCATTGCT CACCAACTAC AATACATTGG 
1150
ATCCTCTTGC AGACCCTATT CTCTGGACAC CATTTCTTCC TTCAGGATCC 
1200
TCTCTTACTT CAGAGGTGAC AAAGACAGAG ACCAGCTGTT CCACGTACAG 
1250
CTACCTCCCA CAAGAGAAAT GA
1300

>AT2G41710.1 longest ORF length:423
MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC 
50
TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK 
100
GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL 
150
SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA 
200
GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE 
250
DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS 
300
QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG 
350
VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS 
400
SLTSEVTKTE TSCSTYSYLP QEK
450