fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G41710 Integrase-type DNA-binding superfamily protein (.1.2.3)

>AT2G41710.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1164, 1210
EcoRV GAT|ATC 482
NdeI CA|TATG 323
PvuII CAG|CTG 1248
SacI GAGCT|C 72
StyI C|C[AT][AT]GG 834


Click here to view TAIR data

>AT2G41710.2 length:1287
ATGGCGTCGG TGTCGTCGTC GGATCAAGGA CCTAAGACAG AAGCAGGATG 
50
TAGCGGCGGA GGAGGAGGAG AGAGCTCGGA GACAGTGGCG GCGAGTGATC 
100
AGATGTTGTT GTATAGAGGT TTTAAGAAGG CGAAGAAGGA GAGAGGTTGT 
150
ACAGCTAAGG AGCGTATTAG TAAAATGCCT CCGTGCACTG CTGGGAAAAG 
200
GAGTTCCATA TACCGGGGAG TCACCAGACA TAGATGGACA GGTCGTTATG 
250
AAGCTCACCT TTGGGATAAG AGTACCTGGA ACCAAAACCA GAACAAGAAG 
300
GGAAAACAAG TTTATCTAGG AGCATATGAT GATGAAGAGG CTGCTGCTAG 
350
AGCTTACGAC CTTGCTGCCT TAAAATATTG GGGTCCTGGG ACACTTATAA 
400
ATTTTCCGGT GACTGATTAT ACCAGGGATT TAGAAGAAAT GCAAAATCTC 
450
TCAAGGGAAG AATACCTTGC ATCTTTACGT AGATATCCCT TTGGCAGAAA 
500
AAGCAGCGGT TTCTCTAGGG GAATAGCGAA ATATCGTGGA CTTCAAAGCC 
550
GATGGGACGC ATCAGCCAGT CGTATGCCTG GACCTGAATA CTTCAGTAAC 
600
ATTCATTACG GGGCAGGTGA TGATCGTGGA ACAGAAGGTG ACTTTCTAGG 
650
TAGCTTTTGT CTGGAAAGAA AGATTGATCT AACAGGATAC ATAAAGTGGT 
700
GGGGAGCCAA CAAGAACCGT CAACCAGAAT CTTCATCAAA AGCATCAGAG 
750
GATGCAAACG TCGAAGATGC TGGTACTGAG CTTAAAACAC TGGAACACAC 
800
ATCCCATGCA ACAGAACCAT ACAAGGCGCC AAACCTTGGC GTCCTTTGTG 
850
GAACTCAGAG AAAAGAAAAA GAAATATCAT CACCATCAAG CTCTTCTGCT 
900
TTAAGCATCT TGTCTCAGTC GCCTGCCTTC AAGAGCCTAG AGGAGAAAGT 
950
GTTGAAGATC CAAGAAAGCT GCAATAATGA AAACGATGAG AATGCAAACC 
1000
GTAACATCAT CAATATGGAG AAGAATAACG GCAAGGCAAT AGAGAAACCA 
1050
GTTGTGAGTC ATGGAGTTGC TTTAGGCGGT GCTGCTGCTT TGTCTCTTCA 
1100
GAAAAGCATG TACCCACTTA CCTCTCTCTT AACGGCTCCA TTGCTCACCA 
1150
ACTACAATAC ATTGGATCCT CTTGCAGACC CTATTCTCTG GACACCATTT 
1200
CTTCCTTCAG GATCCTCTCT TACTTCAGAG GTGACAAAGA CAGAGACCAG 
1250
CTGTTCCACG TACAGCTACC TCCCACAAGA GAAATGA
1300

>AT2G41710.2 longest ORF length:428
MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC 
50
TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK 
100
GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL 
150
SREEYLASLR RYPFGRKSSG FSRGIAKYRG LQSRWDASAS RMPGPEYFSN 
200
IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE 
250
DANVEDAGTE LKTLEHTSHA TEPYKAPNLG VLCGTQRKEK EISSPSSSSA 
300
LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP 
350
VVSHGVALGG AAALSLQKSM YPLTSLLTAP LLTNYNTLDP LADPILWTPF 
400
LPSGSSLTSE VTKTETSCST YSYLPQEK
450