fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G41900 OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)

>AT2G41900.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 43, 1458, 1930
EcoRI G|AATTC 712
EcoRV GAT|ATC 751, 1336
HindIII A|AGCTT 322, 520, 1611, 2099
PvuII CAG|CTG 449, 906, 1148, 1544
SacI GAGCT|C 1804, 1905
SmaI CCC|GGG 861


Click here to view TAIR data

>AT2G41900.1 length:2151
ATGTGCTGTG GATCAGACCG ATTAAACCAG ATCGTGTCAT CAAGATCTTC 
50
GTTGCCAATT TCTTTCGAGG AAGATAACAA TCTTGTTACC AACACAGACA 
100
TGAATCACTT AACAGTCGAA ACAGAGGATA CGTTTGCGAG CTTGCTTGAG 
150
CTTGCAGCTA ACAACGATGT TGAAGGTGTA AGGCTATCTA TCGAGAGAGA 
200
CCCTTCTTGT GTAGACGAAG CTGGTCTCTG GTACGGTCGT CAAAAAGGTT 
250
CTAAAGCTAT GGTCAACGAT TACAGGACTC CGTTGATGGT TGCTGCTACT 
300
TACGGAAGCA TTGATGTGAT CAAGCTTATT GTTTCTTTGA CTGATGCTGA 
350
CGTGAACCGT GCTTGCGGGA ATGATCAGAC CACTGCGTTA CACTGCGCTG 
400
CTTCTGGAGG AGCTGTGAAT GCTATCCAAG TTGTTAAGCT GCTTCTTGCA 
450
GCTGGAGCTG ATTTGAATCT GTTGGATGCT GAAGGTCAAC GAGCTGGTGA 
500
TGTTATTGTT GTTCCTCCTA AGCTTGAAGG CGTGAAGCTG ATGCTTCAGG 
550
AGCTTCTTTC TGCTGATGGA TCATCTACTG CGGAGCGGAA TCTACGGGTT 
600
GTGACAAATG TTCCGAATAG AAGCTCATCT CCGTGTCATT CTCCTACTGG 
650
AGAGAATGGT GGATCAGGGT CTGGTTCACC GCTCGGCTCT CCTTTTAAGC 
700
TGAAATCTAC TGAATTCAAG AAAGAGTATC CGGTTGATCC GTCTTTGCCA 
750
GATATCAAGA ACAGTATCTA CGCGACTGAT GAGTTTAGAA TGTATTCCTT 
800
CAAGGTCCGG CCTTGCTCTC GTGCTTATTC ACATGATTGG ACTGAGTGTC 
850
CTTTTGTTCA CCCGGGTGAA AACGCGAGGA GGAGAGACCC GAGGAAGTTC 
900
CATTACAGCT GCGTTCCTTG CCCGGATTTT AGGAAAGGAG CTTGTAGGAG 
950
AGGAGATATG TGTGAGTATG CGCACGGTGT GTTTGAATGC TGGCTTCATC 
1000
CGGCTCAGTA CAGGACCCGT CTTTGCAAAG ATGGAACAGG CTGTGCTCGG 
1050
CGGGTTTGTT TCTTTGCGCA TACACCCGAG GAGCTTCGAC CTTTGTACGC 
1100
ATCAACTGGT TCAGCGGTTC CTTCGCCTAG ATCGAATGCT GATTATGCAG 
1150
CTGCTTTGAG TCTCCTTCCT GGTTCTCCAT CAGGAGTCTC TGTCATGTCC 
1200
CCGCTTTCCC CATCAGCAGC GGGGAACGGA ATGTCTCATT CGAATATGGC 
1250
TTGGCCACAA CCAAATGTCC CTGCGTTGCA CTTACCAGGA AGCAATCTAC 
1300
AGTCAAGCAG GCTAAGGTCT TCTCTCAATG CAAGGGATAT CCCGACGGAT 
1350
GAGTTCAATA TGTTAGCGGA TTACGAGCAG CAGCAACTCC TCAACGAGTA 
1400
TTCCAATGCT CTGAGCCGTT CTGGTCGGAT GAAATCAATG CCTCCTTCGA 
1450
ATCTTGAAGA TCTTTTCTCA GCAGAAGGCT CTTCATCTCC CCGGTTCACT 
1500
GATTCCGCTT TAGCTTCCGC GGTGTTCTCG CCTACACACA AGTCAGCTGT 
1550
CTTCAACCAG TTCCAACAAC AGCAACAGCA GCAGCAGAGC ATGTTGTCTC 
1600
CAATCAACAC AAGCTTTTCT TCACCAAAGA GCGTTGACCA CTCATTGTTT 
1650
TCAGGTGGAG GAAGAATGTC TCCTCGGAAT GTTGTTGAAC CAATATCACC 
1700
CATGAGTGCT CGGGTTTCCA TGTTGGCTCA GTGCGTGAAG CAACAACAAC 
1750
AGCAACAGCA GCAGCAGCAG CAGCAACATC AGTTCCGTAG CCTTAGCTCC 
1800
AGAGAGCTCA GAACAAACTC TAGCCCAATC GTTGGTTCAC CGGTAAACAA 
1850
CAACACATGG TCATCAAAAT GGGGATCTTC AAATGGTCAA CCGGATTGGG 
1900
GAATGAGCTC AGAAGCACTT GGTAAGTTGA GATCTTCGTC ATCGTTTGAT 
1950
GGTGATGAGC CTGATGTGTC ATGGGTCCAG TCACTGGTGA AGGAGACTCC 
2000
AGCAGAAGCC AAAGAGAAAG CAGCAACATC TTCCTCAGGG GAACACGTGA 
2050
TGAAGCAGCC AAATCCGGTT GAACCGGTAA TGGATCATGC TGGGCTAGAA 
2100
GCTTGGATTG AGCAAATGCA GCTCGATCAG CTTGTGGCTC AGCAGAATTG 
2150
A
2200

>AT2G41900.1 longest ORF length:716
MCCGSDRLNQ IVSSRSSLPI SFEEDNNLVT NTDMNHLTVE TEDTFASLLE 
50
LAANNDVEGV RLSIERDPSC VDEAGLWYGR QKGSKAMVND YRTPLMVAAT 
100
YGSIDVIKLI VSLTDADVNR ACGNDQTTAL HCAASGGAVN AIQVVKLLLA 
150
AGADLNLLDA EGQRAGDVIV VPPKLEGVKL MLQELLSADG SSTAERNLRV 
200
VTNVPNRSSS PCHSPTGENG GSGSGSPLGS PFKLKSTEFK KEYPVDPSLP 
250
DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 
300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR 
350
RVCFFAHTPE ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS 
400
PLSPSAAGNG MSHSNMAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPTD 
450
EFNMLADYEQ QQLLNEYSNA LSRSGRMKSM PPSNLEDLFS AEGSSSPRFT 
500
DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS SPKSVDHSLF 
550
SGGGRMSPRN VVEPISPMSA RVSMLAQCVK QQQQQQQQQQ QQHQFRSLSS 
600
RELRTNSSPI VGSPVNNNTW SSKWGSSNGQ PDWGMSSEAL GKLRSSSSFD 
650
GDEPDVSWVQ SLVKETPAEA KEKAATSSSG EHVMKQPNPV EPVMDHAGLE 
700
AWIEQMQLDQ LVAQQN
750