fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G42200 SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1)

>AT2G42200.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 136
BglII A|GATCT 110
HindIII A|AGCTT 531, 675
StyI C|C[AT][AT]GG 214, 916
XhoI C|TCGAG 270


Click here to view TAIR data

>AT2G42200.1 length:1128
ATGGAGATGG GTTCCAACTC GGGTCCGGGT CATGGTCCGG GTCAGGCAGA 
50
GTCGGGTGGT TCCTCCACTG AGTCATCCTC TTTCAGTGGA GGGCTCATGT 
100
TTGGCCAGAA GATCTACTTC GAGGACGGTG GTGGTGGATC CGGGTCTTCT 
150
TCCTCAGGTG GTCGTTCAAA CAGACGTGTC CGTGGAGGCG GGTCGGGTCA 
200
GTCGGGTCAG ATACCAAGGT GCCAAGTGGA AGGTTGTGGG ATGGATCTAA 
250
CCAATGCAAA AGGTTATTAC TCGAGACACC GAGTTTGTGG AGTGCACTCT 
300
AAAACACCTA AAGTCACTGT GGCTGGTATC GAACAGAGGT TTTGTCAACA 
350
GTGCAGCAGG TTTCATCAGC TTCCGGAATT TGACCTAGAG AAAAGGAGTT 
400
GCCGCAGGAG ACTCGCTGGT CATAATGAGC GACGAAGGAA GCCACAGCCT 
450
GCGTCTCTCT CTGTGTTAGC TTCTCGTTAC GGGAGGATCG CACCTTCGCT 
500
TTACGAAAAT GGTGATGCTG GAATGAATGG AAGCTTTCTT GGGAACCAAG 
550
AGATAGGATG GCCAAGTTCA AGAACATTGG ATACAAGAGT GATGAGGCGG 
600
CCAGTGTCGT CACCGTCATG GCAGATCAAT CCAATGAATG TATTTAGTCA 
650
AGGTTCAGTT GGTGGAGGAG GGACAAGCTT CTCATCTCCA GAGATTATGG 
700
ACACTAAACT AGAGAGCTAC AAGGGAATTG GCGACTCAAA CTGTGCTCTC 
750
TCTCTTCTGT CAAATCCACA TCAACCACAT GACAACAACA ACAACAACAA 
800
CAACAACAAC AACAACAACA ACAATACATG GCGAGCTTCT TCAGGTTTTG 
850
GCCCGATGAC GGTTACAATG GCTCAACCAC CACCTGCACC TAGCCAGCAT 
900
CAGTATCTGA ACCCGCCTTG GGTATTCAAG GACAATGATA ATGATATGTC 
950
TCCTGTTTTG AATTTAGGTC GATACACCGA GCCAGATAAT TGTCAGATAA 
1000
GTAGTGGCAC GGCAATGGGT GAGTTCGAGT TATCTGATCA CCATCATCAA 
1050
AGTAGGAGAC AGTACATGGA AGATGAGAAC ACAAGGGCTT ATGACTCTTC 
1100
TTCTCACCAT ACCAACTGGT CTCTCTGA
1150

>AT2G42200.1 longest ORF length:375
MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS 
50
SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS 
100
KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP 
150
ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR 
200
PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL 
250
SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH 
300
QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ 
350
SRRQYMEDEN TRAYDSSSHH TNWSL
400