fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G42280 bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)

>AT2G42280.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 168
HpaI GTT|AAC 160, 210
SacI GAGCT|C 72, 698


Click here to view TAIR data

>AT2G42280.2 length:903
ATGGATTCAA ATAATCATCT CTACGACCCG AATCCCACCG GGTCGGGTCT 
50
TCTTCGTTTT AGATCAGCTC CGAGCTCTGT TCTCGCCGCT TTTGTTGACG 
100
ACGACAAGAT TGGTTTCGAC TCCGATAGGT TGCTTTCAAG ATTCGTGACC 
150
TCTAATGGCG TTAACGGAGA TCTGGGTTCA CCTAAATTCG AGGATAAGTC 
200
TCCGGTTTCG TTAACGAACA CCTCTGTTTC ATACGCCGCC ACTCTGCCGC 
250
CACCGCCGCA GCTTGAGCCG TCGAGTTTTC TGGGTTTGCC GCCGCATTAC 
300
CCGAGGCAGA GTAAAGGGAT AATGAACTCG GTTGGTTTGG ATCAGTTTCT 
350
CGGTATCAAT AATCATCACA CCAAACCAGT TGAATCTAAT CTTCTCCGTC 
400
AAAGCAGCTC TCCAGCCGGA ATGTTTACTA ATCTCTCTGA CCAAAACGGT 
450
TATGGTTCAA TGAGGAATTT GATGAATTAC GAAGAAGATG AAGAGAGTCC 
500
ATCTAATTCC AATGGATTAA GACGCCATTG CAGTCTCTCT TCAAGGCCAC 
550
CTTCTTCACT TGGAATGCTT TCTCAAATAC CTGAAATCGC ACCCGAAACT 
600
AATTTTCCAT ATAGCCATTG GAATGATCCA TCCAGCTTTA TTGATAACTT 
650
ATCCTCACTT AAAAGAGAAG CCGAGGACGA TGGAAAATTG TTTCTCGGAG 
700
CTCAGAACGG AGAGTCCGGG AATCGTATGC AGTTACTGTC GCATCATTTG 
750
AGCCTACCAA AGTCATCATC GACAGCCTCG GACATGGTTT CAGTGGATAA 
800
GTATCTTCAG CTACAAGATT CTGTTCCTTG TAAAATCAGA GCCAAACGTG 
850
GTTGCGCTAC ACATCCTCGA AGCATCGCTG AACGGGTAAC TTCACCTAGT 
900
TAA
950

>AT2G42280.2 longest ORF length:300
MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT 
50
SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY 
100
PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG 
150
YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET 
200
NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL 
250
SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVTSPS 
300