fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G42300 bHLH048 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)

>AT2G42300.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, BamHI, KpnI, NotI, SmaI
Name Recognition sequence Cut positions
BglII A|GATCT 5268
EcoRI G|AATTC 2534, 7630
EcoRV GAT|ATC 2730, 5941
HindIII A|AGCTT 833, 1063, 3644, 5601, 6269, 8381
HpaI GTT|AAC 598, 3318, 4220, 6209
NcoI C|CATGG 4552
NdeI CA|TATG 3015, 5010, 6168
NheI G|CTAGC 5647, 9151
PacI TTAAT|TAA 4908, 5105
PstI CTGCA|G 180, 5917, 6279, 6497, 7300
PvuII CAG|CTG 177, 7351
SacI GAGCT|C 4984, 5025, 7471
SalI G|TCGAC 8100
SpeI A|CTAGT 956, 5427, 5517, 7744
StyI C|C[AT][AT]GG 215, 578, 4397, 4552
XbaI T|CTAGA 690, 6525, 6770, 9113
XhoI C|TCGAG 4530


Click here to view TAIR data

>AT2G42300 genomic sequence (4386-4874,4958-5071,5153-5218,6285-6353,6478-6549,7306-7479,) length:9185
TTCCTTGTGC CACTTCCTCA AAACATTCAC GAGTTCTTCT TCTCCTTCGT 
50
TTTCAGAGGA ACCATAAGGT AATCGACCAG TCAACAGCTC CAATAGAATC 
100
ACACCAAAAG AATAAACATC GCATTTGTGA GATAATTTGC AATCAGAAGA 
150
AGCTCGGGCT TCGGGTGCAA GGTAAGCAGC TGCAGGAGCT GAGACTGAGA 
200
GTCTTGTGGC AAATCCTTGG TCTATACTTT GCGTCATGGA TGATAGTGAA 
250
TGGTCAGTGA CTTTGGGATA GCCGGAAACC AGTCGTGTGA GACCAAATCC 
300
TGAGACGTGA GGATGCAGCT CATTATCTAA CAGGATTTTG CTTGATTTTA 
350
GGTTGCCGTG AACATACTTT CTCGAACTGT ATTCATGTAT ATACATCAAA 
400
CCCCGAGCAG TCCCTTGAGC TATACATAAC CTCTCAGCCC AAGAGAGTGT 
450
AGGCCGAGTA TTCGAAGGTC CACctacaga aaaaaattca aatgccgtct 
500
cagaaaccag tgatacatga tactcaaagc acagcatatc tcaggaaaat 
550
ggaaaaatct caacgagtac taacttccca aggcagatca agcagaggtt 
600
aactatgaaa aacacacatc tatcggatca taaactaatc tctgtctaag 
650
aaccaaaaag aaatattctt tctgtcacat taaacactct ctagactacc 
700
attaactcat tctcgactta agttttccca tgaaaataac aggaccacat 
750
actataatgc tacacagaag caaatctgta tgcttgtcat cgagttctac 
800
tgtttcaagt ttcaacacat gtaaacacag taaagctttg aacaataaaa 
850
caatgagaag aagcgaacat gttagtcaat acaacacaat cagacaaaga 
900
caaaaaaaaa gctctccact ttatagtcag agcaagtaca cataaaaacc 
950
ttataactag tggtagattt atgcagaatt agcaccaaaa taggaaaaag 
1000
attagtgttt tacCATGTAA GGCAGAGTAC AAGCTGCCAT TGTTAATGAA 
1050
ATCAGTGATG AGAAGCTTCT CGTCCTCTGC ATAGTAGTAA GCTCTTAGCC 
1100
GTACAATGTT AGGATGATTG ATCCTACCAA TGCTCTCAAC TTCATTCACA 
1150
AAATCCTTAA ATCGCCACGT GTCATTGCCG TCGCTGAGCC TTCTAACGGC 
1200
GACAACGGTG GAGGACGATT CCGCCGCCAC TACTCTATAC ACAATCCCGC 
1250
TTCTGCTCTT GCCTATCACG TAAGCCGATG CTCTCAGCAA ATCCTCAAGC 
1300
TCAAGCTCGA ATCCTTCATC AAACGCTACG AATTTACCTT CTTGCCCTTC 
1350
TTCGTCGAAC TCTGAAACCA CCGTCGTCGT CTTTGTCTCC GAATTGTACC 
1400
CATCGGAGCT TCGTTTTCTC CGGATCAGCC ATACAGAGAG AGAAACAGCT 
1450
CCGATTACAA CCGAAACTCC AGAAATCAGA GAAACGGTTA CTGAACCGGT 
1500
GATCTGCTGC TTCTTCTCCT TTGCGTCGTC ATTGCTGATT ACACTAGGGT 
1550
TTGGTTTCTG GAGTTCTTGA GTACCTTCCG GCTTTGCAGC GACGAAATTT 
1600
GGGGTTTTGA TTTTTTCACA CGGCGTTTGC AATGGGAAGC CACAGAGATG 
1650
AGAGTTTCCA GCGAATGCGT TTGGTCCTTG ATTCAACAGA GATCCCACCT 
1700
GAGGTACTTT TCCGGTGAGA TTGTTGTGAC TAAAATCTAA GCTGACGTGA 
1750
ACTCGAAATC GACCGTACGA CGGTGGAATC TCGCCGGTGA ATTGGTTGAA 
1800
AGAGAAATTC AAGGTTCCGA CGAGGCTTCC GAGTTCAGTG AGTGACTCAG 
1850
GGAGTGAACC GTTGAGATGA TTGGAGGAGA AATCAAGGTG GTTGAGTGAC 
1900
TTCATGGACT TGATTTGGGC CGGTATTGGG CCGGAGAGTG AGTTGTGAGA 
1950
GAGATCGATG TACCGGAGCT TGGTTGCTTC GAAGAGACGA ACCGGTATGG 
2000
TTTTAGAGAA ATTGTTGTGA GCTAGATCAA GCCGGTTTAG CGAGTTGAGT 
2050
AAACCGAGTT CTGATGGAAT GTAACCGGAG AGACTTTTTC CGAAGAGTAC 
2100
AAGAGTTGTG ACTCGGCCGT TTGTGCAGAC GATTCCGGAC CAATGGCAAG 
2150
GAGTCGGGTC GGATTCAGAC CAGTGGGTCA TTACTCGGGT CGGGTCGTTA 
2200
TCGACGGCGG ATTTGAGAGC TAGGAGAGAT AAACCGTCGG AATTGAGAGA 
2250
GGAGCAAAAG CTCATGCAGA GAAAGATGGA AGAAACAACA AGTGAAAGAA 
2300
TCGATGGTAA CTTCATtttt tgcttaggat ataggaatct tgaaactttt 
2350
tggttgttaa agaagctaca aattacagat gattcatata gtgtgaggca 
2400
acgagaagtt gcagaggaaa aacggtaaac agtgaagacg aaggagaaga 
2450
ataatgggag atttgaccga ggtatgattc ttttatggtt tcatgttagc 
2500
aacgtggtgt aatgtagtca tgatcaattt tttgaattct tgtccatata 
2550
ctatggtttg aaattttaat aatatataca ctacagttct aattaaaaat 
2600
gtgatatatt gggatttgcg ttttgggttt ttgacatttt gtggttattt 
2650
ttgaaacttt ttgaagttta gttattgatt gatgcaggtg ggttgttgtt 
2700
acatttttaa tttgtgtgta tccgttggtg atatctaggg tcactggatt 
2750
tttatagcat taaaactata tataggtatc aaaaaaaaaa gttacaacaa 
2800
atttgggata caaaaaataa acaaagtgtt atcttaaatg ctatagtcta 
2850
tagaatctta actcgtatag gacctcttca ctcttgagcc atgaaaaaac 
2900
tgtacagtcc cactgggtcg ataattgttt tacttttaca agattcagca 
2950
gtaactaaaa aaaggattaa aatatgttta agaataattg aaaataatcg 
3000
aactcgacct attgcatatg aatttgaatt ggatagagga tgtcatattt 
3050
attcaaatta aaggagggaa gagacggtag agagtggatt gtgtcagaga 
3100
aaaatcatta accaaccgac aaagtaacca cacaaagatg catttgaaaa 
3150
tatgccactt ttggctcctc tactcctagt cttaatgggc aattccgaaa 
3200
tatacacgaa gagtcacaag tcccattgtt gttgggttag cactttgtca 
3250
cggcccaaat tcaacttatt cacaacatca aataaatata tgcatcatat 
3300
catcacatcc gacttttgtt aacaattact tttttcagtt aaagaacttt 
3350
caagaggaaa tagtagtacc ttaaaatcct acaaaacctt gtcgtgcaag 
3400
aactgggagg gctacaaatt gcggtcaatg tacgcaaaca tcttaccgtt 
3450
tttggtacaa acactagaac tccaatgcag tgagtgagat gggccaattt 
3500
tggcaatctc aatcaacggt ccatgtggcc caataaatca ctaaaaacgg 
3550
ccgaattttt agatccatgt aacttaaata attggtgggg acggaaagtc 
3600
ttgtcgtttt catttattcg agtgtggcac tctgattcat ctcaagctta 
3650
ttttttataa aaagagtaat tttagaggct gaacaataac gaccttgaac 
3700
aaaataaaat aaaataagag ggtgaacaac gaccagtcaa aatttgaaaa 
3750
tttactcacc agagtctata aaaattaaaa aggaaaggaa aaaaaaagaa 
3800
tgaatcatag tgaaatgacc ttatttatgg ctccaactat agtgattagt 
3850
aaccactaaa ccagaaaaaa acaagtgacc cattacacag ggattaaaaa 
3900
tactaccgaa taaagcccaa taggcccaat tcaaaagcgt ctctctatca 
3950
tcgtctctcc aaaccccata aattggatat ttcctttctc taaaaatttg 
4000
gctttattaa cagacgcact ccaaagctaa cgttgctttc ttcccactcc 
4050
aaatggctct tgtgctctca gaacacacac agatataata aactcttaac 
4100
gaagaagaag actttttctt ttcttgagca agctctgaga aactcacaga 
4150
gagggacaga gagagaaata tttcattcgc tactctcttt aataccgcca 
4200
ttgatgcaac ctccttcgcg ttaactgtca aaatactccc caactgacaa 
4250
aaattaaatt cctttttttc tctctcgatt ttaaaagctc taaaaggaac 
4300
gagttgatca agtcggtcgg ttctggttat cactgaattt cattcaactc 
4350
ggtttattcc ggtttaagtg tgattttccc ggctaATGGA TCTGACCCAA 
4400
GGTTTCAGAG CTAGATCCGG CGTTGTTGGG CCGGTGGCCG GACTAGAATC 
4450
TCTCAATTTC AGCGACGAAT TTCGGCACTT AGTGACGACG ATGCCTCCGG 
4500
AGACTACTGG CGGCTCCTTC ACGGCTTTAC TCGAGATGCC TGTGACTCAG 
4550
GCCATGGAGC TTCTCCATTT CCCAGATTCA TCGTCTTCTC AGGCCAGAAC 
4600
CGTTACCAGT GGTGATATTT CTCCTACCAC TCTTCACCCT TTCGGGGCTT 
4650
TGACTTTTCC TTCTAACTCG CTTCTCTTGG ACCGCGCCGC TCGTTTCTCG 
4700
GTGATTGCTA CAGAGCAAAA CGGTAATTTT TCCGGCGAGA CTGCTAACTC 
4750
TTTACCTTCT AATCCCGGCG CGAATCTGGA CAGAGTCAAA GCCGAGCCTG 
4800
CTGAGACCGA TTCAATGGTG GAGAATCAGA ACCAGAGCTA CTCTTCTGGA 
4850
AAAAGGAAAG AACGCGAGAA GAAGgtgata ccaattgttc acacaatcaa 
4900
acttgttaat taaacaagag agattagtcc ctaatttctt tattccttaa 
4950
tttctagGTC AAAAGCTCGA CGAAGAAGAA CAAGAGCTCC GTGGAGTCAG 
5000
ACAAGTTGCC ATATGTTCAT GTCAGAGCTC GTCGTGGTCA AGCTACTGAT 
5050
AACCATAGCT TAGCAGAGAG Agtaattcac aatctcacag acatggtttg 
5100
tattaattaa ttagtggcaa tatgctaatt aatcattaac tcttgattat 
5150
agGCAAGAAG GGAGAAGATA AACGCACGAA TGAAGCTGCT ACAGGAACTG 
5200
GTCCCAGGCT GTGATAAGgt ttgtctttag ataattgacc ttttaatcaa 
5250
aaagctaatc aataattaga tcttcatttg tgcttaaaga cagaatcttt 
5300
ctttattaag accaaccccc aaaaagtgat tttttttcta taatttgatc 
5350
atgtggtttg ataagggttt agtgctaaat tcctcttata tgaaaaaggt 
5400
tttgtggtgt gacaaagaac aaaaccacta gtttggtaat ttcactgcct 
5450
tgaagatatg taaactttat tttcgtgtgg ggaagaatat ctcacgggtc 
5500
acaaccattt aggtaaacta gtagtagtaa tacggaagtg atgtgacatt 
5550
gctcaataga ttcttgtttc ttcttcccaa agtgtattca tttgagcttg 
5600
aagcttactc cataaatgcc gataatggat tatatgatgt gggaatgcta 
5650
gctggactgt tcccttaagg ttttgggtag aggggacaga ttttggtgga 
5700
tagatcaagg tcagactgtg ttttggggtc catcttttga taataagtgg 
5750
caaaagttgc aggctttcta tggagggtga ggagtgtagt atcgtctcta 
5800
ataagtttgg tatctatcaa gtagaaagag ggtgaggagt gtagtatcgt 
5850
cactaatatt gttatatgct ttgagtccca caatacctaa ttggttggat 
5900
acatgatgtg acactcctgc agacagctaa ctaatccata gatatcttgg 
5950
aatttagctg caattattgg tggaaggaga tgatgataag tgacaactct 
6000
ttaagagttt gtcaaatttg tggggttttg ggacttgatt gtttgtttca 
6050
tgaaatcctg agaaatcctg aatccatgtt tgtaaactac agatgttgct 
6100
ctgattcgct tttctggcat attatcttga aaagagtaga gttgttgatt 
6150
ttatagaagc cgttatacat atgcaactta ggattaaggc tcattttcac 
6200
actgcttcgt taaccacata tatttctaaa aactatgcct tgttcttctt 
6250
tctttctgac tgaccagaaa gctttggcct gcagATTCAG GGCACTGCAT 
6300
TGGTTCTGGA TGAAATCATT AACCATGTGC AAACTTTACA GCGTCAAGTG 
6350
GAGgtaggac ttcttgcact atcttttgtt gttgtttacc tgaaggtcct 
6400
gaactgaaac actaagctac acaatgtatg ataaaattgg tgccacagtg 
6450
tcacataacc gtttttcttc ttttcagATG CTATCTATGA GACTTGCTGC 
6500
AGTAAACCCC AGAATCGACT TCAATCTAGA CAGCATACTG GCTTCAGAGg 
6550
taagtatcaa ctaatcatat aggagaatta aggttgcatg tgatcttctt 
6600
ttacaataaa aactcttaaa ttcaatgttc actgggaaaa acttcccttt 
6650
gaccatgtta ctcgtttaag taaccatagg gattatgttt ctttgagtaa 
6700
cctttttaag ttgtatcaca aaaagagaaa cttttggata tttattgatc 
6750
caacattaat cgaccctatt ctagactagg cttaaagaag aagaacaacg 
6800
tgggggaaat aaatacttag accttacaaa aatgcagtac aaacagtgag 
6850
atcaaggact ctaaaaaatc ttttgaaagg actcattagt tctctcaatt 
6900
atatcataca gagagataaa agtggtcaga aacacggacc acctttgttc 
6950
tatggtctat gatgctgtct ttttttttta tccttgcaca attatttttc 
7000
tgtgggtctc agtcttaagt tattgttgct tcaagtttca cctatctaat 
7050
ctaataatca acttttgttt ctctgcaaat aactttctta ttaaatgacc 
7100
ttcttctttt acagcttgta caccatttaa gaaccagacc ccactcatta 
7150
aaaaccttgt tcttctagga tgagttacag taaaatagag ctggcttgtt 
7200
gactagattg agaatctagg atgttggatc aatcatctct aagagaagct 
7250
gatatgtttt acaaattgtg ttaataatga tgaggtccaa ttatcttttc 
7300
tgcagAACGG CTCTCTTATG GATGGTAGCT TCAATGCAGA GTCTTATCAT 
7350
CAGCTGCAAC AATGGCCTTT CGACGGCTAC CACCAGCCGG AATGGGGAAG 
7400
AGAAGAAGAT CATCATCAAG CCAATTTCTC AATGGGTTCA GCTACTTTAC 
7450
ACCCAAATCA GGTGAAAATG GAGCTCTAAg ttggaaacag tttgacatgc 
7500
ttatgtgtat atataagagt tatatatatc tactaaagtt tcgattgttg 
7550
aattagaggt agaaaatggt tatgattgtt tcaggtcttt gttcatggcc 
7600
tttctatatt tactagattc ctcaatgtag aattcagaat gtctaaattg 
7650
cgtttccctt gagagaagta tatgaagatt tgatatgtta ctgagcaatt 
7700
acgacgtcgt acacgaatac tatcatccaa tactgcttaa ccgactagtg 
7750
tgaccaattc aatttggtct acctaaatta taaccaaact gccagaaccg 
7800
atttggacta caaaatttcc agtcaaaccg taaaacaaaa tgagaactga 
7850
gaataccaag tcataccgaa cataaaagag agtcaatttc gtatataaat 
7900
ctgttagacc ggataatcta agctgaaacc attatataat tcccaattaa 
7950
actgacaatt tcaataaacc aaaattgaaa ttctcggttc ggttcgaatg 
8000
aaaccttttg taggtcgtgg tcgtatatag ttggacactt gacaaatctg 
8050
agcatttcct ttttgcttac agcggaaata tctgaaccaa cgcgATGCCG 
8100
TCGACGCAGT CCTTGACCGT CGCAGCGAAG ACGCTACGAA ATCGGATCTT 
8150
CTCTAGGTCT GGATCTACAT CCGCCGGTCC GAGTCGGTGG GCGACGCCAG 
8200
GTCACGAGGA GCGACCTAAG GGTTACTTTA TGAACCGTAC TCCTCCGGCA 
8250
CCAGGACAGT CGCGAAAATG GGAAGATTGG GAGCTTCCTT GTTACATCAC 
8300
CAGCTTCCTT ACAATTGTTA TCCTCGGCGT TGGACTCAAT GCCAAACCTG 
8350
ATCTTTCAAT CGAGACTTGG GCTCATCAGA AAGCTTTAGA GCGTCTTGAG 
8400
ATGGAGAAGC TCGCGACCGC TGGAGATTCA TCTGATTAAg catcaccgtt 
8450
ggatctccgg ttgcttgatt tggtatgtcc ttattctccg ggagttgagg 
8500
agttttttta ccgtttaatg atgatgataa cgaagactgg agagttaggg 
8550
tttcgtttgg cccttgaact ttgtttcaat tctcctttgt tttgtcgata 
8600
atgatgatgt tcatgaaata agtgttcttt taactgttta gacgcaattg 
8650
ccttcactct ctacttctta ttacaattct caaatttggt cacttttgat 
8700
ttactcattt ctcaaatgat tcaatttcga ctattgattg ctgcattact 
8750
aattggagaa agagattaaa cgagagttgt atgctgatgt tgtgtgcttc 
8800
tcttccttag ttcatggctt gtttatgttc tctgtgaatc tcaggtttgc 
8850
ttgtttcact cagtgcagtg catattgatt agattaatag ctactttatg 
8900
ttagtcgatt cttatctctt tagatcatct tttttatact tgtcatttgt 
8950
tgtagtagta gtgataagct gatagtgtag ctctaactag ggcatggatt 
9000
gttcctttgt gttgtagaca tgttcgtgat tataggttat tgcagcgtgc 
9050
acaataagtt ttgtaggctt tcaagtggtt ggaatggcat cagccattgt 
9100
tagatgcaac actctagatt tcagttttgt catttgctgt attttattag 
9150
gctagcgttt ggagttttca tggtgtcagc tattg
9200