fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G42660 Homeodomain-like superfamily protein (.1)

>AT2G42660.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 10
EcoRV GAT|ATC 715
SalI G|TCGAC 747
XhoI C|TCGAG 319, 580


Click here to view TAIR data

>AT2G42660.1 length:768
ATGGCCGGGA GATCTTCGCC GGGAAAATGC TCCACGTGGC TTGACCTGAA 
50
CAGAGAAGAA ACAGTGGAGA AGAACAATGA AGAAGAGTCA TCAGTGGAAG 
100
ACGAAGACCA AATCACGAAT AACGTTAGAC AGTATATTCG GTCCAACATG 
150
CCTCGGCTTC GTTGGACGCC TGATCTTCAT CTCTCCTTCG TTCGTGCTGT 
200
CCAACGACTA GGCGGTCCAG ACAGAGCGAC GCCGAAATTG GTTCTTGAGA 
250
TGATGAATCT AAAAGGATTG AGTATTGCAC ATGTCAAGAG TCATTTACAG 
300
ATGTATCGAA GTAAGAAGCT CGAGCCGTCT TCTCGCCCTG GATTTGGAGC 
350
TTTCATGAGT GGACAAAGAA GCTATTTGAT GGACATGATC GACTCTCGAT 
400
GTATCCCTCA TAGCGATTTA AGACATGCCT ATAACTCTAA AACCGTTCCT 
450
TCGAGGGTAC TCAATCAAGA CGCGGTCGTT ACAAATCTTG GAGGTAACTT 
500
TCTTATGCGA CCTTCGAGCT GGTTTAGCGG GTTATGCAGA AATGACCGAG 
550
ACAGCACAGA GAACAAGACT CTGCCTCTAC TCGAGATTAG GAAGAAGAAC 
600
AATGAGAAAA GAGTCCGAGA TGAAGAAGTA TCATCAGTCA AACGATTGAA 
650
ATCAATGTCC GGAGGTGGGA TACAGTTGCC TGAGTTTGGA AATTGCAGGC 
700
AAAAACCAAC AGATGATATC AACACAATGC TCTCGCTCTC TCTGTTGTCG 
750
ACATCATCAG AACCGTAA
800

>AT2G42660.1 longest ORF length:255
MAGRSSPGKC STWLDLNREE TVEKNNEEES SVEDEDQITN NVRQYIRSNM 
50
PRLRWTPDLH LSFVRAVQRL GGPDRATPKL VLEMMNLKGL SIAHVKSHLQ 
100
MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP 
150
SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN 
200
NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS 
250
TSSEP
300