fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G42940 Predicted AT-hook DNA-binding family protein (.1)

>AT2G42940.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 37
EcoRV GAT|ATC 727


Click here to view TAIR data

>AT2G42940.1 length:774
ATGGCTGGAG GTACAGCTCT AACTCCAACC TCTGTAGGAT CCAAGTCTGT 
50
TCCAATGAGG AACCATGAAG CAACAGAGAG AGGCAACACC AACAACAACC 
100
TGAGAGCATT ACCCAAAGCC GTCCAACCGG TTTCATCAAT CGAAGGAGAG 
150
ATGGCTAAGA GGCCACGTGG CAGACCCGCT GGCTCCAAGA ACAAACCCAA 
200
ACCACCAATC ATTGTGACTC ACGACAGTCC AAATTCCCTC AGAGCTAACG 
250
CCGTTGAGAT CAGCTCAGGT TGTGACATCT GTGAGACTTT ATCGGATTTT 
300
GCAAGAAGGA AACAGAGAGG TCTCTGCATT CTCAGTGCCA ATGGTTGTGT 
350
CACCAATGTG ACATTAAGGC AACCAGCTTC ATCAGGAGCA ATTGTCACAT 
400
TACACGGACG TTACGAGATC CTCTCATTGC TTGGATCAAT CTTGCCTCCA 
450
CCAGCACCAC TTGGAATAAC TGGTCTGACC ATTTACTTAG CCGGACCTCA 
500
AGGACAGGTT GTTGGTGGAG GAGTGGTTGG TGGGCTAATC GCATCTGGTC 
550
CTGTTGTTCT CATGGCTGCA TCTTTCATGA ATGCTGTTTT TGATCGTCTT 
600
CCTATGGATG ATGATGAAGC TGCCTCTATG CAGAACCAGC AGTACTACCA 
650
GAATGGAAGA TCCCGTCCTT TAGATGACAT TCATGGACTG CCTCAAAATC 
700
TGCTCACTAA TGGAAACTCG GCTTCTGATA TCTACTCTTG GGGGCCTGCG 
750
CAGCGTGTCA TGTCGAAACC TTAA
800

>AT2G42940.1 longest ORF length:257
MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE 
50
MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF 
100
ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP 
150
PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL 
200
PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA 
250
QRVMSKP
300