fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G43000 ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1)

>AT2G43000.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 796
EcoRI G|AATTC 418
EcoRV GAT|ATC 160
StyI C|C[AT][AT]GG 178


Click here to view TAIR data

>AT2G43000.1 length:828
ATGAGTGGCG AAGGTAACTT AGGTAAGGAT CATGAAGAAG AAAACGAAGC 
50
ACCACTTCCT GGGTTCAGGT TTCATCCGAC GGATGAAGAG CTTTTAGGAT 
100
ACTATCTTCG AAGAAAAGTA GAGAACAAAA CCATCAAACT CGAACTTATC 
150
AAACAGATCG ATATCTATAA GTACGATCCT TGGGATCTTC CAAGAGTGAG 
200
CAGCGTCGGA GAAAAGGAGT GGTACTTCTT CTGCATGAGA GGTAGGAAAT 
250
ACAGGAATAG CGTTCGACCA AACCGAGTGA CCGGTTCAGG TTTCTGGAAA 
300
GCCACTGGTA TTGATAAACC GGTTTACTCC AATCTTGACT GTGTTGGTCT 
350
CAAGAAATCT CTGGTTTACT ATCTTGGTTC AGCCGGTAAA GGCACCAAAA 
400
CCGATTGGAT GATGCATGAA TTCCGCCTCC CCTCCACCAC GAAAACCGAC 
450
TCTCCAGCTC AACAAGCAGA GGTATGGACA CTTTGCAGAA TCTTCAAACG 
500
AGTCACATCT CAAAGAAACC CAACCATCTT ACCACCAAAC CGAAAACCGG 
550
TTATCACTTT AACCGACACT TGTTCTAAGA CCAGCAGCTT AGATTCCGAC 
600
CACACGAGCC ACCGTACAGT AGATTCCATG TCCCACGAGC CGCCGCTTCC 
650
ACAGCCACAG AATCCTTATT GGAACCAACA TATAGTTGGT TTTAATCAAC 
700
CGACATATAC TGGTAATGAT AATAACCTCC TGATGAGTTT CTGGAACGGC 
750
AACGGTGGAG ATTTCATAGG AGACTCAGCA AGTTGGGATG AACTTAGATC 
800
TGTTATAGAT GGCAACACTA AACCCTAG
850

>AT2G43000.1 longest ORF length:275
MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI 
50
KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK 
100
ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD 
150
SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD 
200
HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG 
250
NGGDFIGDSA SWDELRSVID GNTKP
300