fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 (.1.2)

>AT2G43010.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, KpnI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 221, 291
BglII A|GATCT 55
EcoRV GAT|ATC 628
HindIII A|AGCTT 568, 875
HpaI GTT|AAC 420
NcoI C|CATGG 287
PstI CTGCA|G 115, 858
PvuII CAG|CTG 773
SpeI A|CTAGT 78
StyI C|C[AT][AT]GG 9, 287


Click here to view TAIR data

>AT2G43010.1 length:1293
ATGGAACACC AAGGTTGGAG TTTTGAGGAG AATTATAGTT TGTCCACTAA 
50
TAGAAGATCT ATCAGGCCAC AAGATGAACT AGTGGAGTTA TTATGGCGAG 
100
ATGGACAAGT GGTTCTGCAG AGCCAAACTC ATAGAGAACA AACCCAAACC 
150
CAGAAACAAG ATCATCATGA AGAAGCCCTA AGATCCAGCA CCTTTCTTGA 
200
AGATCAAGAA ACTGTCTCTT GGATCCAATA CCCTCCAGAT GAAGACCCAT 
250
TCGAACCCGA CGACTTCTCC TCCCACTTCT TCTCAACCAT GGATCCCCTC 
300
CAGAGACCAA CCTCAGAGAC GGTTAAGCCT AAGTCCAGTC CTGAACCTCC 
350
TCAAGTCATG GTTAAGCCTA AGGCCTGTCC TGACCCTCCT CCTCAAGTCA 
400
TGCCTCCTCC AAAATTTAGG TTAACAAATT CATCATCGGG GATTAGGGAA 
450
ACAGAAATGG AACAGTACTC GGTAACGACC GTTGGACCTA GCCATTGCGG 
500
AAGCAACCCA TCACAGAACG ATCTCGATGT CTCAATGAGT CATGATCGAA 
550
GCAAAAACAT AGAAGAAAAG CTTAATCCGA ACGCAAGTTC CTCATCAGGT 
600
GGCTCCTCTG GTTGCAGCTT TGGCAAAGAT ATCAAAGAAA TGGCTAGTGG 
650
AAGATGCATC ACAACCGACC GTAAGAGAAA ACGTATAAAT CACACTGACG 
700
AATCTGTATC TCTATCAGAT GCAATCGGTA ACAAGTCGAA CCAACGATCA 
750
GGATCAAACC GAAGGAGTCG AGCAGCTGAA GTTCATAATC TCTCCGAAAG 
800
GAGGAGGAGA GATAGGATCA ATGAGAGAAT GAAGGCTTTG CAAGAACTAA 
850
TACCTCACTG CAGTAAAACT GATAAAGCTT CGATTTTAGA CGAAGCCATA 
900
GATTATTTGA AATCACTTCA GTTACAGCTT CAAGTGATGT GGATGGGGAG 
950
TGGAATGGCG GCGGCGGCGG CTTCGGCTCC GATGATGTTC CCCGGAGTTC 
1000
AACCTCAGCA GTTCATACGT CAGATACAGA GCCCGGTACA GTTACCTCGA 
1050
TTTCCGGTTA TGGATCAGTC TGCAATTCAG AACAATCCCG GTTTAGTTTG 
1100
CCAAAACCCG GTACAAAACC AGATCATCTC CGACCGGTTT GCTAGATACA 
1150
TCGGTGGGTT CCCACACATG CAGGCCGCGA CTCAGATGCA GCCGATGGAG 
1200
ATGTTGAGAT TTAGTTCACC GGCGGGACAG CAAAGTCAAC AACCGTCGTC 
1250
TGTGCCGACG AAGACCACCG ACGGTTCTCG TTTGGACCAC TAG
1300

>AT2G43010.1 longest ORF length:430
MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT 
50
QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL 
100
QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE 
150
TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG 
200
GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS 
250
GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI 
300
DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR 
350
FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQMQPME 
400
MLRFSSPAGQ QSQQPSSVPT KTTDGSRLDH 
450