fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G44910 ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1)

>AT2G44910.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tsp509I, Tth111I, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 425
AciI C|CGC 312, 837, 849
AflIII A|CPuPyGT 822
AhdI GACNNN|NNGTC 240
AluI AG|CT 35, 271, 412, 511, 567, 645, 738
AvaI C|PyCGPuG 523
BanII GPuGCPy|C 272
BfaI C|TAG 575, 952
BsaHI GPu|CGPyC 235
BsaJI C|CNNGG 704, 916
BsiHKAI G[AT]GC[AT]|C 272
BslI CCNNNNN|NNGG 238
BsoBI C|PyCGPuG 523
Bsp1286I G[GAT]GC[CAT]|C 272, 807
BssKI |CCNGG 238
BstUI CG|CG 425
BstYI Pu|GATCPy 369
Cac8I GCN|NGC 570
DdeI C|TNAG 33, 69, 249, 274, 351, 594, 741
DpnI GA-CH3|TC 368, 477, 506
DpnII |GATC 368, 477, 506
DraI TTT|AAA 535, 678
DraIII CACNNN|GTG 804
EaeI Py|GGCCPu 892
Fnu4HI GC|NGC 312, 719, 837, 852, 890
HaeII PuGCGC|Py 337
HaeIII GG|CC 891
HhaI GCG|C 336
HinP1I G|CGC 336
HincII GTPy|PuAC 50, 90
HindIII A|AGCTT 36
HinfI G|ANTC 29, 77, 161, 179, 347, 590, 710, 782
HpaII C|CGG 237
Hpy188I TCN|GA 68, 134, 231, 350, 557, 623, 698, 735
Hpy99I CG[AT]CG| 233, 317, 449, 473, 714
HpyCH4III ACN|GT 494, 584, 628, 843, 879
HpyCH4IV A|CGT 208, 261, 820
HpyCH4V TG|CA 126, 217, 720, 774
MboI |GATC 368, 477, 506
MseI T|TAA 204, 534, 552, 677, 908
MslI CAPyNN|NNPuTG 778
MspA1I C[AC]G|C[GT]G 851
MspI C|CGG 237
MwoI GCNNNNN|NNGC 411, 445, 469, 814
N.BstNBI GAGTCNNNN|N 34, 352
NciI CC|[CG]GG 238
NlaIII CATG| 124, 772, 778, 802
NspI PuCATG|Py 125, 773
PaeR7I C|TCGAG 523
PstI CTGCA|G 218, 721
RsaI GT|AC 210
SacI GAGCT|C 272
Sau3AI |GATC 368, 477, 506
ScrFI CC|NGG 238
SfcI C|TPuPyAG 218, 721
SmlI C|TPyPuAG 523
StyI C|C[AT][AT]GG 916
Taqƒ¿I T|CGA 344, 500, 522, 712
TfiI G|A[AT]TC 77, 161, 590, 710
TliI C|TCGAG 523
TseI G|C[AT]GC 719, 852
Tsp45I |GT[CG]AC 846
TspRI NNCA[CG]TGNN| 844
XhoI C|TCGAG 523


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>AT2G44910.1 length:957
ATGGGGGAAA GAGATGATGG GTTGGGTTTG AGTCTAAGCT TGGGAAATAG 
50
TCAACAAAAA GAACCATCTC TGAGGTTGAA TCTTATGCCG TTGACAACTT 
100
CTTCTTCTTC TTCTTCGTTT CAACACATGC ACAATCAGAA TAACAATAGC 
150
CATCCCCAGA AGATTCATAA CATCTCTTGG ACTCATCTGT TTCAATCTTC 
200
TGGGATTAAA CGTACAACTG CAGAGAGAAA CTCCGACGCC GGGTCATTTC 
250
TAAGAGGTTT CAACGTGAAC AGAGCTCAGT CTTCGGTGGC GGTAGTGGAC 
300
TTGGAAGAAG AAGCCGCCGT CGTCTCGTCT CCAAACAGCG CCGTTTCGAG 
350
TCTGAGTGGA AATAAAAGGG ATCTTGCGGT GGCGAGAGGA GGAGATGAAA 
400
ACGAGGCGGA GAGAGCTTCT TGCTCACGCG GAGGGGGAAG CGGTGGTAGC 
450
GACGATGAAG ACGGCGGAAA CGGCGACGGA TCAAGGAAGA AACTACGGTT 
500
ATCGAAGGAT CAAGCTCTTG TTCTCGAGGA GACTTTTAAA GAACATAGCA 
550
CTCTTAATCC GAAGCAAAAG CTGGCTCTAG CAAAACAGTT GAATCTAAGG 
600
GCAAGACAAG TTGAAGTGTG GTTTCAGAAC CGTAGGGCAA GGACGAAGCT 
650
GAAACAAACG GAGGTTGATT GTGAGTATTT AAAGAGATGT TGCGATAATC 
700
TGACCGAGGA GAATCGACGG CTGCAGAAAG AAGTGTCGGA GCTGAGGGCG 
750
TTGAAGTTGT CTCCACATCT CTACATGCAC ATGACTCCTC CTACTACTCT 
800
CACCATGTGC CCTTCTTGCG AACGTGTCTC CTCCTCTGCC GCCACTGTGA 
850
CCGCTGCTCC TTCCACTACT ACTACTCCTA CGGTGGTGGG GCGGCCAAGT 
900
CCACAGCGAT TAACTCCTTG GACTGCTATT TCTCTCCAGC AAAAATCAGG 
950
TCGCTAG
1000

>AT2G44910.1 longest ORF length:318
MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS 
50
HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD 
100
LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS 
150
DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR 
200
ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA 
250
LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS 
300
PQRLTPWTAI SLQQKSGR
350