fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G44940 Integrase-type DNA-binding superfamily protein (.1)

>AT2G44940.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
HindIII A|AGCTT 689
HpaI GTT|AAC 544
SacI GAGCT|C 410
XhoI C|TCGAG 407


Click here to view TAIR data

>AT2G44940.1 length:888
ATGGCAAGAC AAATCAACAT AGAGAGTAGT GTTTCTCAAG TTACCTTTAT 
50
CTCCTCCGCC ATCCCCGCCG TATCTTCCTC CTCCTCCATC ACCGCTTCCG 
100
CCTCATTGTC CTCTTCACCT ACTACATCTT CCTCTTCTTC GTCATCAACA 
150
AATTCTAACT TCATTGAGGA AGACAACTCT AAAAGAAAAG CATCTCGAAG 
200
ATCATTGTCA TCGTTAGTCT CCGTTGAAGA CGATGATGAT CAAAACGGTG 
250
GAGGTGGGAA ACGGCGAAAG ACCAACGGTG GAGATAAACA TCCGACGTAT 
300
AGAGGAGTGA GGATGAGGAG TTGGGGAAAA TGGGTGTCGG AGATTAGAGA 
350
GCCGAGAAAG AAATCAAGAA TCTGGCTCGG GACTTATCCA ACGGCTGAGA 
400
TGGCAGCTCG AGCTCATGAC GTAGCGGCTT TAGCCATTAA AGGTACAACG 
450
GCTTACCTCA ATTTTCCCAA GTTAGCCGGC GAGCTTCCTC GTCCAGTCAC 
500
AAATTCTCCT AAAGACATTC AAGCCGCCGC CTCTTTAGCG GCCGTTAACT 
550
GGCAAGATTC GGTCAACGAT GTGAGTAATT CTGAAGTGGC TGAAATAGTT 
600
GAAGCCGAGC CGAGTCGAGC CGTGGTGGCT CAGTTGTTTT CTTCGGACAC 
650
AAGCACGACG ACGACGACTC AGAGTCAAGA GTATTCGGAA GCTTCGTGTG 
700
CTTCGACTTC GGCGTGTACG GACAAAGACA GTGAGGAAGA GAAGCTGTTT 
750
GATTTGCCGG ATTTGTTTAC CGATGAGAAT GAGATGATGA TACGAAACGA 
800
TGCGTTTTGC TACTACTCGT CCACGTGGCA GCTTTGTGGA GCCGATGCTG 
850
GGTTTCGGCT TGAAGAGCCG TTTTTTCTAT CTGAATGA
900

>AT2G44940.1 longest ORF length:295
MARQINIESS VSQVTFISSA IPAVSSSSSI TASASLSSSP TTSSSSSSST 
50
NSNFIEEDNS KRKASRRSLS SLVSVEDDDD QNGGGGKRRK TNGGDKHPTY 
100
RGVRMRSWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD VAALAIKGTT 
150
AYLNFPKLAG ELPRPVTNSP KDIQAAASLA AVNWQDSVND VSNSEVAEIV 
200
EAEPSRAVVA QLFSSDTSTT TTTQSQEYSE ASCASTSACT DKDSEEEKLF 
250
DLPDLFTDEN EMMIRNDAFC YYSSTWQLCG ADAGFRLEEP FFLSE
300