fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G45650 AGL6 AGAMOUS-like 6 (.1)

>AT2G45650.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, ApaI, ApaLI, AscI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TspRI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 403
AciI C|CGC 393, 402
AfeI AGC|GCT 372
AluI AG|CT 91, 99, 156, 282, 384
Aor51HI(Eco47III) AGC|GCT 372
ApoI Pu|AATTPy 324, 595
AseI AT|TAAT 43
AvaI C|PyCGPuG 376
BamHI G|GATCC 579
BfaI C|TAG 473
BglII A|GATCT 339
BsaAI PyAC|GTPu 679
BsaJI C|CNNGG 150, 575, 741
BsaWI [AT]|CCGG[AT] 600
BslI CCNNNNN|NNGG 746
BsoBI C|PyCGPuG 376
BssKI |CCNGG 574
BstUI CG|CG 403
BstYI Pu|GATCPy 339, 579
Bsu36I CC|TNAGG 454
BtgI C|CPuPyGG 150
Cac8I GCN|NGC 155, 369
DdeI C|TNAG 228, 453
DpnI GA-CH3|TC 338, 578
DpnII |GATC 338, 578
EaeI Py|GGCCPu 572
Fnu4HI GC|NGC 383, 393, 561
HaeII PuGCGC|Py 372
HaeIII GG|CC 518, 571
HhaI GCG|C 371, 415
HinP1I G|CGC 371, 415
HindIII A|AGCTT 92, 283
HinfI G|ANTC 300, 407
HpaII C|CGG 573, 599
Hpy188I TCN|GA 591
HpyCH4III ACN|GT 76, 200
HpyCH4IV A|CGT 678, 714
HpyCH4V TG|CA 366, 632, 681
MboI |GATC 338, 578
MseI T|TAA 42, 285, 501
MslI CAPyNN|NNPuTG 620
MspI C|CGG 573, 599
MwoI GCNNNNN|NNGC 126, 229, 380, 402, 558, 570
NciI CC|[CG]GG 574
NlaIII CATG| 521
NlaIV GGN|NCC 579
PaeR7I C|TCGAG 376
RsaI GT|AC 312
Sau3AI |GATC 338, 578
ScrFI CC|NGG 574
SmlI C|TPyPuAG 144, 376, 496
StyI C|C[AT][AT]GG 741
Taqƒ¿I T|CGA 195, 375, 387, 409
TfiI G|A[AT]TC 300
TliI C|TCGAG 376
TseI G|C[AT]GC 383
Tsp45I |GT[CG]AC 54, 276
Tsp509I |AATT 181, 323, 587, 594, 731
XhoI C|TCGAG 376


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>AT2G45650.1 length:759
ATGGGAAGAG GGAGAGTGGA GATGAAGAGG ATAGAGAACA AGATTAATAG 
50
ACAAGTGACC TTCTCAAAAA GAAGAAACGG TTTGCTGAAG AAAGCTTATG 
100
AGCTTTCTGT TCTTTGCGAT GCCGAAGTTG CTCTCATCAT CTTCTCAAGC 
150
CGTGGCAAGC TCTACGAGTT TGGTAGTGTT GGAATTGAAA GCACAATCGA 
200
ACGGTATAAT CGTTGTTACA ACTGCTCTCT AAGCAATAAT AAGCCTGAAG 
250
AGACTACACA GAGTTGGTGT CAGGAGGTGA CAAAGCTTAA ATCCAAATAC 
300
GAATCTCTTG TTCGTACTAA CAGGAATTTG CTTGGAGAAG ATCTTGGAGA 
350
AATGGGTGTG AAGGAACTGC AAGCGCTCGA GAGGCAGCTC GAAGCCGCTC 
400
TTACCGCGAC TCGACAGCGC AAGACACAAG TTATGATGGA AGAAATGGAA 
450
GACCTTAGGA AAAAGGAGAG GCAACTAGGA GACATAAACA AACAACTCAA 
500
GATTAAGTTT GAAACGGAAG GCCATGCTTT CAAAACCTTT CAAGACTTAT 
550
GGGCAAACTC GGCGGCATCG GTGGCCGGGG ATCCAAACAA TTCTGAATTT 
600
CCGGTAGAGC CTTCTCATCC TAATGTATTG GATTGCAACA CCGAACCCTT 
650
TTTACAAATA GGGTTTCAAC AACATTACTA CGTGCAAGGT GAAGGGTCTT 
700
CGGTATCAAA GAGTAACGTG GCAGGTGAGA CTAATTTCGT CCAAGGTTGG 
750
GTTCTTTGA
800

>AT2G45650.1 longest ORF length:252
MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS 
50
RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY 
100
ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME 
150
DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF 
200
PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW 
250
VL
300