fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G46410 CPC CAPRICE, Homeodomain-like superfamily protein (.1)

>AT2G46410.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HinfI, HpaI, HphI, HpyCH4III, HpyCH4IV, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, MwoI, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TfiI, TliI, TseI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 100
AvaI C|PyCGPuG 192
BamHI G|GATCC 188
BglII A|GATCT 129
BsaHI GPu|CGPyC 201, 241
BsaJI C|CNNGG 59, 192
BsoBI C|PyCGPuG 192
BssKI |CCNGG 191
BstF5I GGATGNN| 144
BstYI Pu|GATCPy 129, 188
DpnI GA-CH3|TC 128, 175, 187
DpnII |GATC 128, 175, 187
HpaII C|CGG 180, 191, 203
Hpy188I TCN|GA 9, 72, 114, 140
Hpy99I CG[AT]CG| 36, 242
MboI |GATC 128, 175, 187
MspI C|CGG 180, 191, 203
NciI CC|[CG]GG 191
NlaIV GGN|NCC 188
Sau3AI |GATC 128, 175, 187
ScrFI CC|NGG 191
SmaI CCC|GGG 192
StyI C|C[AT][AT]GG 59
Taqƒ¿I T|CGA 90
XmaI C|CCGGG 192


Click here to view TAIR data

>AT2G46410.1 length:285
ATGTTTCGTT CAGACAAGGC GGAAAAAATG GATAAACGAC GACGGAGACA 
50
GAGCAAAGCC AAGGCTTCTT GTTCCGAAGA GGTGAGTAGT ATCGAATGGG 
100
AAGCTGTGAA GATGTCAGAA GAAGAAGAAG ATCTCATTTC TCGGATGTAT 
150
AAACTCGTTG GCGACAGGTG GGAGTTGATC GCCGGAAGGA TCCCGGGACG 
200
GACGCCGGAG GAGATAGAGA GATATTGGCT TATGAAACAC GGCGTCGTTT 
250
TTGCCAACAG ACGAAGAGAC TTTTTTAGGA AATGA
300

>AT2G46410.1 longest ORF length:94
MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY 
50
KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK
100