fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G46590 DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2)

>AT2G46590.2 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AciI C|CGC 464
AclI AA|CGTT 43
AluI AG|CT 380, 685, 892, 957
AvaII G|G[AT]CC 340
BclI T|GATCA 906, 987
BglII A|GATCT 456, 519
BsaBI GATNN|NNATC 557, 998
BsaHI GPu|CGPyC 142
BsaWI [AT]|CCGG[AT] 706, 757
BslI CCNNNNN|NNGG 112, 375, 1056
BspHI T|CATGA 65, 990
BstF5I GGATGNN| 1074
BstYI Pu|GATCPy 352, 456, 519, 1096
DdeI C|TNAG 357, 580, 598
DpnI GA-CH3|TC 61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095
DpnII |GATC 61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095
EcoNI CCTNN|NNNAGG 375
Fnu4HI GC|NGC 632
HaeIII GG|CC 114
HinfI G|ANTC 68, 771, 1013
HpaII C|CGG 168, 705, 756
Hpy188I TCN|GA 431, 590, 888
Hpy99I CG[AT]CG| 670
HpyCH4III ACN|GT 162, 780
HpyCH4IV A|CGT 42
HpyCH4V TG|CA 109, 251, 317, 546
MboI |GATC 61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095
MseI T|TAA 45, 698, 711, 735
MslI CAPyNN|NNPuTG 566
MspI C|CGG 168, 705, 756
MwoI GCNNNNN|NNGC 204
N.BstNBI GAGTCNNNN|N 1018
NdeI CA|TATG 574
NlaIII CATG| 64, 544, 566, 748, 989, 1016, 1101
NlaIV GGN|NCC 664
RsaI GT|AC 1080
Sau3AI |GATC 61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095
Sau96I G|GNCC 340
ScaI AGT|ACT 1081
SfcI C|TPuPyAG 291, 1085
SmlI C|TPyPuAG 384, 1044
Taqƒ¿I T|CGA 328, 500
TfiI G|A[AT]TC 68, 771
TseI G|C[AT]GC 632
Tsp509I |AATT 239
TspRI NNCA[CG]TGNN| 781
XmnI GAANN|NNTTC 896


Click here to view TAIR data

>AT2G46590.2 length:1110
ATGGACGCTA CGAAGTGGAC ACAGGGTTTT CAAGAAATGA TGAACGTTAA 
50
ACCAATGGAG CAGATCATGA TTCCTAATAA CAACACACAT CAACCAAACA 
100
CCACATCCAA TGCAAGGCCA AACACCATTC TCACATCTAA CGGCGTCTCA 
150
ACTGCTGGAG CAACCGTCTC CGGCGTAAGC AACAACAATA ACAATACGGC 
200
GGTTGTGGCG GAGAGGAAAG CAAGACCACA AGAGAAACTA AATTGTCCAA 
250
GATGCAACTC AACCAACACA AAGTTTTGTT ACTACAACAA CTATAGTCTC 
300
ACACAACCAA GATACTTCTG CAAAGGTTGT CGAAGGTATT GGACCGAAGG 
350
TGGATCTCTT AGGAATGTTC CTGTGGGAGG AAGCTCAAGA AAGAACAAGA 
400
GATCATCTTC ATCTTCTTCA TCAAACATCC TTCAGACAAT ACCATCTTCA 
450
CTTCCAGATC TAAACCCGCC AATACTCTTC TCAAACCAAA TCCATAATAA 
500
ATCGAAAGGG TCATCACAAG ATCTCAACTT GTTGTCTTTC CCAGTCATGC 
550
AAGATCAACA TCATCATCAT GTCCATATGT CTCAGTTTCT TCAGATGCCT 
600
AAGATGGAGG GAAATGGTAA CATAACTCAT CAGCAGCAGC CTTCATCATC 
650
TTCTTCTGTC TATGGTTCCT CGTCGTCTCC TGTTTCAGCT CTTGAACTTT 
700
TAAGAACCGG AGTTAATGTT TCTTCAAGAT CAGGGATTAA CTCATCGTTC 
750
ATGCCTTCCG GTTCAATGAT GGATTCAAAC ACTGTGCTTT ACACTTCTTC 
800
AGGGTTTCCA ACAATGGTGG ATTACAAGCC AAGTAATCTC TCCTTCTCTA 
850
CCGATCATCA AGGGCTTGGA CACAATAGCA ACAATAGGTC TGAAGCTCTT 
900
CATAGTGATC ATCACCAACA AGGTAGAGTT TTGTTTCCAT TTGGGGATCA 
950
AATGAAGGAG CTTTCATCAA GCATAACACA AGAAGTTGAT CATGATGATA 
1000
ATCAACAACA GAAGAGTCAT GGAAATAATA ATAATAATAA TAACTCAAGC 
1050
CCTAATAATG GATATTGGAG TGGGATGTTC AGTACTACAG GAGGAGGATC 
1100
TTCATGGTGA 
1150

>AT2G46590.2 longest ORF length:369
MDATKWTQGF QEMMNVKPME QIMIPNNNTH QPNTTSNARP NTILTSNGVS 
50
TAGATVSGVS NNNNNTAVVA ERKARPQEKL NCPRCNSTNT KFCYYNNYSL 
100
TQPRYFCKGC RRYWTEGGSL RNVPVGGSSR KNKRSSSSSS SNILQTIPSS 
150
LPDLNPPILF SNQIHNKSKG SSQDLNLLSF PVMQDQHHHH VHMSQFLQMP 
200
KMEGNGNITH QQQPSSSSSV YGSSSSPVSA LELLRTGVNV SSRSGINSSF 
250
MPSGSMMDSN TVLYTSSGFP TMVDYKPSNL SFSTDHQGLG HNSNNRSEAL 
300
HSDHHQQGRV LFPFGDQMKE LSSSITQEVD HDDNQQQKSH GNNNNNNNSS 
350
PNNGYWSGMF STTGGGSSW
400