Locus |
Common name |
Short description |
AT2G46590 |
DAG2, AtDof2,5 |
DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) |
>AT2G46590.2 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AciI
| C|CGC |
464 |
AclI
| AA|CGTT |
43 |
AluI
| AG|CT |
380, 685, 892, 957 |
AvaII
| G|G[AT]CC |
340 |
BclI
| T|GATCA |
906, 987 |
BglII
| A|GATCT |
456, 519 |
BsaBI
| GATNN|NNATC |
557, 998 |
BsaHI
| GPu|CGPyC |
142 |
BsaWI
| [AT]|CCGG[AT] |
706, 757 |
BslI
| CCNNNNN|NNGG |
112, 375, 1056 |
BspHI
| T|CATGA |
65, 990 |
BstF5I
| GGATGNN| |
1074 |
BstYI
| Pu|GATCPy |
352, 456, 519, 1096 |
DdeI
| C|TNAG |
357, 580, 598 |
DpnI
| GA-CH3|TC |
61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095 |
DpnII
| |GATC |
61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095 |
EcoNI
| CCTNN|NNNAGG |
375 |
Fnu4HI
| GC|NGC |
632 |
HaeIII
| GG|CC |
114 |
HinfI
| G|ANTC |
68, 771, 1013 |
HpaII
| C|CGG |
168, 705, 756 |
Hpy188I
| TCN|GA |
431, 590, 888 |
Hpy99I
| CG[AT]CG| |
670 |
HpyCH4III
| ACN|GT |
162, 780 |
HpyCH4IV
| A|CGT |
42 |
HpyCH4V
| TG|CA |
109, 251, 317, 546 |
MboI
| |GATC |
61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095 |
MseI
| T|TAA |
45, 698, 711, 735 |
MslI
| CAPyNN|NNPuTG |
566 |
MspI
| C|CGG |
168, 705, 756 |
MwoI
| GCNNNNN|NNGC |
204 |
N.BstNBI
| GAGTCNNNN|N |
1018 |
NdeI
| CA|TATG |
574 |
NlaIII
| CATG| |
64, 544, 566, 748, 989, 1016, 1101 |
NlaIV
| GGN|NCC |
664 |
RsaI
| GT|AC |
1080 |
Sau3AI
| |GATC |
61, 351, 399, 455, 518, 551, 726, 851, 905, 944, 986, 1095 |
Sau96I
| G|GNCC |
340 |
ScaI
| AGT|ACT |
1081 |
SfcI
| C|TPuPyAG |
291, 1085 |
SmlI
| C|TPyPuAG |
384, 1044 |
Taqƒ¿I
| T|CGA |
328, 500 |
TfiI
| G|A[AT]TC |
68, 771 |
TseI
| G|C[AT]GC |
632 |
Tsp509I
| |AATT |
239 |
TspRI
| NNCA[CG]TGNN| |
781 |
XmnI
| GAANN|NNTTC |
896 |
Click here to view TAIR data
>AT2G46590.2 length:1110
ATGGACGCTA CGAAGTGGAC ACAGGGTTTT CAAGAAATGA TGAACGTTAA | 50 |
ACCAATGGAG CAGATCATGA TTCCTAATAA CAACACACAT CAACCAAACA | 100 |
CCACATCCAA TGCAAGGCCA AACACCATTC TCACATCTAA CGGCGTCTCA | 150 |
ACTGCTGGAG CAACCGTCTC CGGCGTAAGC AACAACAATA ACAATACGGC | 200 |
GGTTGTGGCG GAGAGGAAAG CAAGACCACA AGAGAAACTA AATTGTCCAA | 250 |
GATGCAACTC AACCAACACA AAGTTTTGTT ACTACAACAA CTATAGTCTC | 300 |
ACACAACCAA GATACTTCTG CAAAGGTTGT CGAAGGTATT GGACCGAAGG | 350 |
TGGATCTCTT AGGAATGTTC CTGTGGGAGG AAGCTCAAGA AAGAACAAGA | 400 |
GATCATCTTC ATCTTCTTCA TCAAACATCC TTCAGACAAT ACCATCTTCA | 450 |
CTTCCAGATC TAAACCCGCC AATACTCTTC TCAAACCAAA TCCATAATAA | 500 |
ATCGAAAGGG TCATCACAAG ATCTCAACTT GTTGTCTTTC CCAGTCATGC | 550 |
AAGATCAACA TCATCATCAT GTCCATATGT CTCAGTTTCT TCAGATGCCT | 600 |
AAGATGGAGG GAAATGGTAA CATAACTCAT CAGCAGCAGC CTTCATCATC | 650 |
TTCTTCTGTC TATGGTTCCT CGTCGTCTCC TGTTTCAGCT CTTGAACTTT | 700 |
TAAGAACCGG AGTTAATGTT TCTTCAAGAT CAGGGATTAA CTCATCGTTC | 750 |
ATGCCTTCCG GTTCAATGAT GGATTCAAAC ACTGTGCTTT ACACTTCTTC | 800 |
AGGGTTTCCA ACAATGGTGG ATTACAAGCC AAGTAATCTC TCCTTCTCTA | 850 |
CCGATCATCA AGGGCTTGGA CACAATAGCA ACAATAGGTC TGAAGCTCTT | 900 |
CATAGTGATC ATCACCAACA AGGTAGAGTT TTGTTTCCAT TTGGGGATCA | 950 |
AATGAAGGAG CTTTCATCAA GCATAACACA AGAAGTTGAT CATGATGATA | 1000 |
ATCAACAACA GAAGAGTCAT GGAAATAATA ATAATAATAA TAACTCAAGC | 1050 |
CCTAATAATG GATATTGGAG TGGGATGTTC AGTACTACAG GAGGAGGATC | 1100 |
TTCATGGTGA | 1150 |
>AT2G46590.2 longest ORF length:369
MDATKWTQGF QEMMNVKPME QIMIPNNNTH QPNTTSNARP NTILTSNGVS | 50 |
TAGATVSGVS NNNNNTAVVA ERKARPQEKL NCPRCNSTNT KFCYYNNYSL | 100 |
TQPRYFCKGC RRYWTEGGSL RNVPVGGSSR KNKRSSSSSS SNILQTIPSS | 150 |
LPDLNPPILF SNQIHNKSKG SSQDLNLLSF PVMQDQHHHH VHMSQFLQMP | 200 |
KMEGNGNITH QQQPSSSSSV YGSSSSPVSA LELLRTGVNV SSRSGINSSF | 250 |
MPSGSMMDSN TVLYTSSGFP TMVDYKPSNL SFSTDHQGLG HNSNNRSEAL | 300 |
HSDHHQQGRV LFPFGDQMKE LSSSITQEVD HDDNQQQKSH GNNNNNNNSS | 350 |
PNNGYWSGMF STTGGGSSW | 400 |
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