Locus |
Common name |
Short description |
AT2G46680 |
ATHB7, ATHB-7 |
ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) |
>AT2G46680.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AluI
| AG|CT |
184, 192, 261, 343, 664 |
AvaI
| C|PyCGPuG |
265 |
AvaII
| G|G[AT]CC |
731 |
BanII
| GPuGCPy|C |
242 |
BclI
| T|GATCA |
555 |
BfaI
| C|TAG |
186, 194 |
BsaJI
| C|CNNGG |
166, 208, 754 |
BsaWI
| [AT]|CCGG[AT] |
479, 492, 507 |
BslI
| CCNNNNN|NNGG |
758 |
BsoBI
| C|PyCGPuG |
265 |
Bsp1286I
| G[GAT]GC[CAT]|C |
242 |
BspHI
| T|CATGA |
456, 561, 772 |
BsrI
| ACTGGN| |
129 |
BtsI
| GCAGTGNN| |
413 |
DdeI
| C|TNAG |
148, 271, 285, 313, 355, 441 |
DpnI
| GA-CH3|TC |
118, 422, 554, 638 |
DpnII
| |GATC |
118, 422, 554, 638 |
Fnu4HI
| GC|NGC |
203, 260, 445 |
HindIII
| A|AGCTT |
344 |
HinfI
| G|ANTC |
144, 321, 459 |
HpaII
| C|CGG |
23, 478, 491, 506 |
Hpy188I
| TCN|GA |
95, 147, 230, 286, 354, 462, 687, 711 |
Hpy99I
| CG[AT]CG| |
110, 379 |
HpyCH4V
| TG|CA |
201, 360 |
MboI
| |GATC |
118, 422, 554, 638 |
MseI
| T|TAA |
326, 644 |
MslI
| CAPyNN|NNPuTG |
566 |
MspA1I
| C[AC]G|C[GT]G |
665 |
MspI
| C|CGG |
23, 478, 491, 506 |
MwoI
| GCNNNNN|NNGC |
200, 435 |
N.BstNBI
| GAGTCNNNN|N |
149, 326 |
NlaIII
| CATG| |
55, 455, 539, 560, 771 |
PaeR7I
| C|TCGAG |
265 |
PvuII
| CAG|CTG |
665 |
RsaI
| GT|AC |
274 |
Sau3AI
| |GATC |
118, 422, 554, 638 |
Sau96I
| G|GNCC |
731 |
SmlI
| C|TPyPuAG |
160, 265 |
SspI
| AAT|ATT |
17 |
StyI
| C|C[AT][AT]GG |
166, 754 |
Taqƒ¿I
| T|CGA |
264, 318 |
TfiI
| G|A[AT]TC |
459 |
TliI
| C|TCGAG |
265 |
TseI
| G|C[AT]GC |
203, 260, 445 |
Tsp45I
| |GT[CG]AC |
125 |
Tsp509I
| |AATT |
180, 746 |
TspRI
| NNCA[CG]TGNN| |
129, 413 |
XhoI
| C|TCGAG |
265 |
Click here to view TAIR data
>AT2G46680.1 length:777
ATGACAGAAG GTGGAGAATA TTCTCCGGCG ATGATGTCAG CAGAGCCATT | 50 |
CTTGACCATG AAGAAGATGA AGAAGAGCAA CCACAACAAG AACAATCAGA | 100 |
GAAGGTTTAG CGACGAGCAG ATCAAGTCAC TGGAGATGAT GTTTGAGTCT | 150 |
GAGACAAGGC TTGAGCCAAG GAAGAAGGTT CAATTAGCTA GAGAGCTAGG | 200 |
GTTGCAGCCG AGGCAAGTGG CTATATGGTT TCAGAACAAG AGGGCTCGTT | 250 |
GGAAATCCAA GCAGCTCGAG ACTGAGTACA ACATTCTCAG ACAAAACTAC | 300 |
GACAACTTGG CTTCTCAGTT CGAGTCCTTA AAGAAAGAAA AACAAGCTTT | 350 |
AGTCTCTGAG TTGCAGAGGC TAAAAGAGGC GACGCAAAAG AAGACACAGG | 400 |
AGGAGGAAAG GCAGTGTAGT GGAGATCAAG CGGTGGTTGC TCTAAGCAGC | 450 |
ACACATCATG AATCAGAAAA CGAAGAGAAC CGGAGGCGTA AACCGGAAGA | 500 |
GGTTAGACCG GAGATGGAGA TGAAAGATGA TAAGGGTCAT CATGGGGTTA | 550 |
TGTGTGATCA TCATGATTAT GAAGATGATG ATAATGGTTA TAGTAACAAC | 600 |
ATCAAGAGAG AGTATTTTGG TGGGTTTGAG GAAGAACCAG ATCACTTAAT | 650 |
GAACATTGTT GAACCAGCTG ATAGTTGTTT GACATCATCT GATGATTGGA | 700 |
GAGGTTTCAA ATCAGATACT ACTACTCTCT TGGACCAATC CAGCAACAAT | 750 |
TACCCTTGGC GGGATTTTTG GTCATGA | 800 |
>AT2G46680.1 longest ORF length:258
MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES | 50 |
ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY | 100 |
DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS | 150 |
THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN | 200 |
IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN | 250 |
YPWRDFWS | 300 |
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