fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G46680 ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)

>AT2G46680.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 184, 192, 261, 343, 664
AvaI C|PyCGPuG 265
AvaII G|G[AT]CC 731
BanII GPuGCPy|C 242
BclI T|GATCA 555
BfaI C|TAG 186, 194
BsaJI C|CNNGG 166, 208, 754
BsaWI [AT]|CCGG[AT] 479, 492, 507
BslI CCNNNNN|NNGG 758
BsoBI C|PyCGPuG 265
Bsp1286I G[GAT]GC[CAT]|C 242
BspHI T|CATGA 456, 561, 772
BsrI ACTGGN| 129
BtsI GCAGTGNN| 413
DdeI C|TNAG 148, 271, 285, 313, 355, 441
DpnI GA-CH3|TC 118, 422, 554, 638
DpnII |GATC 118, 422, 554, 638
Fnu4HI GC|NGC 203, 260, 445
HindIII A|AGCTT 344
HinfI G|ANTC 144, 321, 459
HpaII C|CGG 23, 478, 491, 506
Hpy188I TCN|GA 95, 147, 230, 286, 354, 462, 687, 711
Hpy99I CG[AT]CG| 110, 379
HpyCH4V TG|CA 201, 360
MboI |GATC 118, 422, 554, 638
MseI T|TAA 326, 644
MslI CAPyNN|NNPuTG 566
MspA1I C[AC]G|C[GT]G 665
MspI C|CGG 23, 478, 491, 506
MwoI GCNNNNN|NNGC 200, 435
N.BstNBI GAGTCNNNN|N 149, 326
NlaIII CATG| 55, 455, 539, 560, 771
PaeR7I C|TCGAG 265
PvuII CAG|CTG 665
RsaI GT|AC 274
Sau3AI |GATC 118, 422, 554, 638
Sau96I G|GNCC 731
SmlI C|TPyPuAG 160, 265
SspI AAT|ATT 17
StyI C|C[AT][AT]GG 166, 754
Taqƒ¿I T|CGA 264, 318
TfiI G|A[AT]TC 459
TliI C|TCGAG 265
TseI G|C[AT]GC 203, 260, 445
Tsp45I |GT[CG]AC 125
Tsp509I |AATT 180, 746
TspRI NNCA[CG]TGNN| 129, 413
XhoI C|TCGAG 265


Click here to view TAIR data

>AT2G46680.1 length:777
ATGACAGAAG GTGGAGAATA TTCTCCGGCG ATGATGTCAG CAGAGCCATT 
50
CTTGACCATG AAGAAGATGA AGAAGAGCAA CCACAACAAG AACAATCAGA 
100
GAAGGTTTAG CGACGAGCAG ATCAAGTCAC TGGAGATGAT GTTTGAGTCT 
150
GAGACAAGGC TTGAGCCAAG GAAGAAGGTT CAATTAGCTA GAGAGCTAGG 
200
GTTGCAGCCG AGGCAAGTGG CTATATGGTT TCAGAACAAG AGGGCTCGTT 
250
GGAAATCCAA GCAGCTCGAG ACTGAGTACA ACATTCTCAG ACAAAACTAC 
300
GACAACTTGG CTTCTCAGTT CGAGTCCTTA AAGAAAGAAA AACAAGCTTT 
350
AGTCTCTGAG TTGCAGAGGC TAAAAGAGGC GACGCAAAAG AAGACACAGG 
400
AGGAGGAAAG GCAGTGTAGT GGAGATCAAG CGGTGGTTGC TCTAAGCAGC 
450
ACACATCATG AATCAGAAAA CGAAGAGAAC CGGAGGCGTA AACCGGAAGA 
500
GGTTAGACCG GAGATGGAGA TGAAAGATGA TAAGGGTCAT CATGGGGTTA 
550
TGTGTGATCA TCATGATTAT GAAGATGATG ATAATGGTTA TAGTAACAAC 
600
ATCAAGAGAG AGTATTTTGG TGGGTTTGAG GAAGAACCAG ATCACTTAAT 
650
GAACATTGTT GAACCAGCTG ATAGTTGTTT GACATCATCT GATGATTGGA 
700
GAGGTTTCAA ATCAGATACT ACTACTCTCT TGGACCAATC CAGCAACAAT 
750
TACCCTTGGC GGGATTTTTG GTCATGA
800

>AT2G46680.1 longest ORF length:258
MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES 
50
ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY 
100
DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS 
150
THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN 
200
IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN 
250
YPWRDFWS
300