fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G46680 ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)

>AT2G46680.2 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 184, 192, 261, 343, 658
AvaI C|PyCGPuG 265
AvaII G|G[AT]CC 725
BanII GPuGCPy|C 242
BclI T|GATCA 549
BfaI C|TAG 186, 194
BsaJI C|CNNGG 166, 208, 748
BsaWI [AT]|CCGG[AT] 473, 486, 501
BslI CCNNNNN|NNGG 752
BsoBI C|PyCGPuG 265
Bsp1286I G[GAT]GC[CAT]|C 242
BspHI T|CATGA 450, 555, 766
BsrI ACTGGN| 129
BtsI GCAGTGNN| 407
DdeI C|TNAG 148, 271, 285, 313, 355, 435
DpnI GA-CH3|TC 118, 416, 548, 632
DpnII |GATC 118, 416, 548, 632
Fnu4HI GC|NGC 203, 260, 439
HindIII A|AGCTT 344
HinfI G|ANTC 144, 321, 453
HpaII C|CGG 23, 472, 485, 500
Hpy188I TCN|GA 95, 147, 230, 286, 354, 456, 681, 705
Hpy99I CG[AT]CG| 110, 373
HpyCH4V TG|CA 201
MboI |GATC 118, 416, 548, 632
MseI T|TAA 326, 638
MslI CAPyNN|NNPuTG 560
MspA1I C[AC]G|C[GT]G 659
MspI C|CGG 23, 472, 485, 500
MwoI GCNNNNN|NNGC 200, 429
N.BstNBI GAGTCNNNN|N 149, 326
NlaIII CATG| 55, 449, 533, 554, 765
PaeR7I C|TCGAG 265
PvuII CAG|CTG 659
RsaI GT|AC 274
Sau3AI |GATC 118, 416, 548, 632
Sau96I G|GNCC 725
SmlI C|TPyPuAG 160, 265
SspI AAT|ATT 17
StyI C|C[AT][AT]GG 166, 748
Taqƒ¿I T|CGA 264, 318
TfiI G|A[AT]TC 453
TliI C|TCGAG 265
TseI G|C[AT]GC 203, 260, 439
Tsp45I |GT[CG]AC 125
Tsp509I |AATT 180, 740
TspRI NNCA[CG]TGNN| 129, 407
XhoI C|TCGAG 265


Click here to view TAIR data

>AT2G46680.2 length:771
ATGACAGAAG GTGGAGAATA TTCTCCGGCG ATGATGTCAG CAGAGCCATT 
50
CTTGACCATG AAGAAGATGA AGAAGAGCAA CCACAACAAG AACAATCAGA 
100
GAAGGTTTAG CGACGAGCAG ATCAAGTCAC TGGAGATGAT GTTTGAGTCT 
150
GAGACAAGGC TTGAGCCAAG GAAGAAGGTT CAATTAGCTA GAGAGCTAGG 
200
GTTGCAGCCG AGGCAAGTGG CTATATGGTT TCAGAACAAG AGGGCTCGTT 
250
GGAAATCCAA GCAGCTCGAG ACTGAGTACA ACATTCTCAG ACAAAACTAC 
300
GACAACTTGG CTTCTCAGTT CGAGTCCTTA AAGAAAGAAA AACAAGCTTT 
350
AGTCTCTGAG AGGCTAAAAG AGGCGACGCA AAAGAAGACA CAGGAGGAGG 
400
AAAGGCAGTG TAGTGGAGAT CAAGCGGTGG TTGCTCTAAG CAGCACACAT 
450
CATGAATCAG AAAACGAAGA GAACCGGAGG CGTAAACCGG AAGAGGTTAG 
500
ACCGGAGATG GAGATGAAAG ATGATAAGGG TCATCATGGG GTTATGTGTG 
550
ATCATCATGA TTATGAAGAT GATGATAATG GTTATAGTAA CAACATCAAG 
600
AGAGAGTATT TTGGTGGGTT TGAGGAAGAA CCAGATCACT TAATGAACAT 
650
TGTTGAACCA GCTGATAGTT GTTTGACATC ATCTGATGAT TGGAGAGGTT 
700
TCAAATCAGA TACTACTACT CTCTTGGACC AATCCAGCAA CAATTACCCT 
750
TGGCGGGATT TTTGGTCATG A
800

>AT2G46680.2 longest ORF length:256
MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES 
50
ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY 
100
DNLASQFESL KKEKQALVSE RLKEATQKKT QEEERQCSGD QAVVALSSTH 
150
HESENEENRR RKPEEVRPEM EMKDDKGHHG VMCDHHDYED DDNGYSNNIK 
200
REYFGGFEEE PDHLMNIVEP ADSCLTSSDD WRGFKSDTTT LLDQSSNNYP 
250
WRDFWS
300