fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G47270 bHLH151, UPB1 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1)

>AT2G47270.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tsp45I, TspRI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 134
AluI AG|CT 115, 168
BanII GPuGCPy|C 62
BfaI C|TAG 120
BsaBI GATNN|NNATC 91
BsaJI C|CNNGG 100
Bsp1286I G[GAT]GC[CAT]|C 62, 71
BspHI T|CATGA 89
BstUI CG|CG 134
DpnI GA-CH3|TC 85, 91
DpnII |GATC 85, 91
HhaI GCG|C 135
HinP1I G|CGC 135
HindIII A|AGCTT 116
HinfI G|ANTC 30, 208
Hpy188I TCN|GA 94, 192
HpyCH4III ACN|GT 298
HpyCH4V TG|CA 264
MboI |GATC 85, 91
MseI T|TAA 304
MwoI GCNNNNN|NNGC 69, 167
NlaIII CATG| 88
PflFI GACN|NNGTC 131
Sau3AI |GATC 85, 91
StyI C|C[AT][AT]GG 100
Taqƒ¿I T|CGA 64
TfiI G|A[AT]TC 30
Tsp509I |AATT 34
Tth111I GACN|NNGTC 131
XbaI T|CTAGA 121


Click here to view TAIR data

>AT2G47270.1 length:309
ATGGGTGTAA CATTAGAAGG ACAAAGAAAG GAATCAATTT GGGTTTTGAT 
50
GAGAAGACAA AGGGCTCGAA GGGCACTTGT GAAGAAGATC ATGATCCGAC 
100
CAAGGAAGAG TGTAGAAGCT TCTAGAAGAC CTTGTCGCGC AATACACAGA 
150
CGAGTGAAGA CGCTAAAAGA GCTTGTTCCC AACACCAAAA CATCAGAAGG 
200
TTTAGATGGA CTCTTTAGAC AAACGGCAGA TTATATCTTG GCTTTGGAAA 
250
TGAAAGTGAA AGTTATGCAG ACAATGGTTC AGGTTTTGAC CGAAACTAAC 
300
TGTGTTTAA
350

>AT2G47270.1 longest ORF length:102
MGVTLEGQRK ESIWVLMRRQ RARRALVKKI MIRPRKSVEA SRRPCRAIHR 
50
RVKTLKELVP NTKTSEGLDG LFRQTADYIL ALEMKVKVMQ TMVQVLTETN 
100
CV
150