Locus |
Common name |
Short description |
AT2G47270 |
bHLH151, UPB1 |
UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) |
>AT2G47270.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tsp45I, TspRI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
134 |
AluI
| AG|CT |
115, 168 |
BanII
| GPuGCPy|C |
62 |
BfaI
| C|TAG |
120 |
BsaBI
| GATNN|NNATC |
91 |
BsaJI
| C|CNNGG |
100 |
Bsp1286I
| G[GAT]GC[CAT]|C |
62, 71 |
BspHI
| T|CATGA |
89 |
BstUI
| CG|CG |
134 |
DpnI
| GA-CH3|TC |
85, 91 |
DpnII
| |GATC |
85, 91 |
HhaI
| GCG|C |
135 |
HinP1I
| G|CGC |
135 |
HindIII
| A|AGCTT |
116 |
HinfI
| G|ANTC |
30, 208 |
Hpy188I
| TCN|GA |
94, 192 |
HpyCH4III
| ACN|GT |
298 |
HpyCH4V
| TG|CA |
264 |
MboI
| |GATC |
85, 91 |
MseI
| T|TAA |
304 |
MwoI
| GCNNNNN|NNGC |
69, 167 |
NlaIII
| CATG| |
88 |
PflFI
| GACN|NNGTC |
131 |
Sau3AI
| |GATC |
85, 91 |
StyI
| C|C[AT][AT]GG |
100 |
Taqƒ¿I
| T|CGA |
64 |
TfiI
| G|A[AT]TC |
30 |
Tsp509I
| |AATT |
34 |
Tth111I
| GACN|NNGTC |
131 |
XbaI
| T|CTAGA |
121 |
Click here to view TAIR data
>AT2G47270.1 length:309
ATGGGTGTAA CATTAGAAGG ACAAAGAAAG GAATCAATTT GGGTTTTGAT | 50 |
GAGAAGACAA AGGGCTCGAA GGGCACTTGT GAAGAAGATC ATGATCCGAC | 100 |
CAAGGAAGAG TGTAGAAGCT TCTAGAAGAC CTTGTCGCGC AATACACAGA | 150 |
CGAGTGAAGA CGCTAAAAGA GCTTGTTCCC AACACCAAAA CATCAGAAGG | 200 |
TTTAGATGGA CTCTTTAGAC AAACGGCAGA TTATATCTTG GCTTTGGAAA | 250 |
TGAAAGTGAA AGTTATGCAG ACAATGGTTC AGGTTTTGAC CGAAACTAAC | 300 |
TGTGTTTAA | 350 |
>AT2G47270.1 longest ORF length:102
MGVTLEGQRK ESIWVLMRRQ RARRALVKKI MIRPRKSVEA SRRPCRAIHR | 50 |
RVKTLKELVP NTKTSEGLDG LFRQTADYIL ALEMKVKVMQ TMVQVLTETN | 100 |
CV | 150 |
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