fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G47520 AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1)

>AT2G47520.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
NcoI C|CATGG 169
StyI C|C[AT][AT]GG 169
XhoI C|TCGAG 257


Click here to view TAIR data

>AT2G47520.1 length:516
ATGTGTGGGG GAGCTATCAT TTCTGATTTC ATCTGGTCGA AATCTGAGTC 
50
AGAACCGAGT CAACTCGGCT CTGTTAGCAG CAGGAAGAAG CGTAAACCCG 
100
TCTCAGTGAG TGAAGAAAGA GATGGGAAAC GAGAGAGGAA GAATCTGTAC 
150
AGAGGGATAA GGCAGAGGCC ATGGGGCAAA TGGGCAGCGG AGATTCGTGA 
200
CCCGAGCAAA GGTGTACGTG TCTGGCTTGG CACATTCAAA ACCGCCGACG 
250
AAGCTGCTCG AGCCTACGAC GTTGCTGCCA TCAAAATCCG TGGCCGGAAA 
300
GCCAAACTGA ATTTCCCAAA CACTCAAGTA GAAGAAGAAG CCGATACTAA 
350
ACCAGGGGGG AATCAAAATG AGCTGATTTC GGAAAACCAA GTAGAGAGCT 
400
TATCGGAGGA CCTGATGGCA TTGGAGGATT ACATGAGATT CTATCAGATT 
450
CCGGTTGCCG ACGACCAATC GGCGACCGAT ATTGGAAATT TATGGAGCTA 
500
TCAAGACTCC AATTAA
550

>AT2G47520.1 longest ORF length:171
MCGGAIISDF IWSKSESEPS QLGSVSSRKK RKPVSVSEER DGKRERKNLY 
50
RGIRQRPWGK WAAEIRDPSK GVRVWLGTFK TADEAARAYD VAAIKIRGRK 
100
AKLNFPNTQV EEEADTKPGG NQNELISENQ VESLSEDLMA LEDYMRFYQI 
150
PVADDQSATD IGNLWSYQDS N
200