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| Locus | Common name | Short description |
| AT2G47680 | zinc finger (CCCH type) helicase family protein (.1) |
>AT2G47680.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NotI, PacI, SacI, SalI, SmaI, SpeI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 1062, 1317 |
| BglII | A|GATCT | 445, 459, 1108, 1746 |
| HindIII | A|AGCTT | 1195, 2776, 2856, 2898 |
| NcoI | C|CATGG | 2145 |
| NdeI | CA|TATG | 1022, 1919 |
| NheI | G|CTAGC | 1432, 2844 |
| PstI | CTGCA|G | 2731 |
| PvuII | CAG|CTG | 725 |
| StyI | C|C[AT][AT]GG | 226, 932, 1390, 2145, 2868 |
| XbaI | T|CTAGA | 1105, 1578 |
| XhoI | C|TCGAG | 118 |
Click here to view TAIR data
>AT2G47680.1 length:3048
ATGGCGGTTT CTTCGCCGAC TTCGTCTTCC AGCTCTTCTG AATCGTTACC | 50 |
TTTACCCTCC TCCAACTTCG CTTCGCTTCC GATTATGGCG ATGAAAAGGA | 100 |
GAATCATCGA CAAAATCCTC GAGAATCGCG TCACTCTCAT CGTCGGCGAG | 150 |
CCTGGATGCG GGAAGAGTTC ACAAGTTCCA CAGTTCCTTC TGGAAGCAAA | 200 |
CATGGCTCCC ATTTTGTGTA CACAGCCTAG GAGATTTGCG GTTGTAGCTG | 250 |
TTGCTAAGAT GGTTGCTAAA TCTCGCAACT CCGATTTAGG TGGAGAAATT | 300 |
GGTTACCACA TTGGGCATTC TAAGATTTTG ACCGAAGGGT CGAAAATTCT | 350 |
GTTCAAAACT GCTGGAGTTC TGTTGGATGA AATGCTAGAC AAGGGGTTGA | 400 |
ATGCACTAAA GTACAAGGTT ATCATTCTTG ATGAAGTGCA TGAAAGATCT | 450 |
GTGGAGTCAG ATCTTGTTCT TGTCTGTGTT AAGCAGTTTC TCATGAAGAA | 500 |
TAATGACCTC AGGGTGGTCT TGATGTCTGC AACTGCTGAT ATAACAAGGT | 550 |
ACAGAGACTA CTTTAAAGAA CTAGGCAGGG GTGAACGCGT AGAAGTAGTT | 600 |
GCTATTCCTA GCCCTGACCA GAGAACAATT TTCCAGCGAA GAGTATTATA | 650 |
TCTTGAGCAG GTTGCAGGAT TGCTTGGTGT GAGTTCTGAT TTGTCAGCTT | 700 |
ACTGTCCTGG TCCAAGTCCT TCTTCAGCTG ATACTGAAAT CAAACCTGAA | 750 |
CTGCAAAATC TTATTCATGA TCTTATCTTA TATATTCATG AAAAAGAACC | 800 |
AGACATTGAG AAGAGTATTT TGGTTTTCCT TCCGACATAC TACTCCCTTG | 850 |
AGCAGCAGTA TCATCAATTG GAACCCTTTT TTGCATCTTT TGAGGTTCAC | 900 |
ATATTGCACC GAAGCATTGA CACCGAGCAA GCCTTGGCGG CTATGAAGAT | 950 |
ATGCAGATCC CGCCGCAAGG TAATATTGGC TACAAACATT GCGGAATCTT | 1000 |
CGGTAACAAT ACCCAAAGTA GCATATGTCA TTGACTCGTG CCGGTCTCTG | 1050 |
CAAGTGTTCT GGGATCCGTC CAGAAAAAGA GACGCAGTAC AGCTTGTTTG | 1100 |
GGTCTCTAGA TCTCAGGCTG AGCAACGTAG AGGGAGGACA GGTCGAACAT | 1150 |
GTGATGGTGA GGTGTATCGC CTGGTGCCGA GTGCATTTTT TAACAAGCTT | 1200 |
GAAGAACATG AGCCCCCATC TATACTTAAG CTGTCATTGA GACAACAAGT | 1250 |
TCTCCATATT TGCTGCACGG AATCCAGAGC CATTAATGAC GCAAATGCAT | 1300 |
TGCTGGCAAA AGCTATGGAT CCACCAGACC CAGATGTCGT TGACGATGCA | 1350 |
TTAAGGATGC TGTTAAGCAT ACAAGCATTG CGGAAATCGC CTAGGGGACG | 1400 |
TTACGAGCCC ACATTTTATG GACGGTTGCT TGCTAGCTTC CCATTGTCCT | 1450 |
TTGATGCATC TATTCTGGTC GTCAAGTTTG GTGAAATGGG AATGCTAAGA | 1500 |
CAAGGGATTC TATTAGGTGT CCTGATGGAT ACCCTACCAC TTCCTATCCA | 1550 |
TCATCCTTTT GGAGATGATT CACTGTTTCT AGAGTATGTT GACCACTATT | 1600 |
TTGGTGGCAG CAAGACCATT TCTGGTGGGC GGAGGGAGAT GGTACTCATG | 1650 |
GCAAACTTTT GTGCTTTTCA GTTTTGGCAA CGTGTCTTTA AGGATAAGCA | 1700 |
TCGTCTTGAA AACTTGAAAC AACTCCTGTC AAAAGAGAAA GACAAAGATC | 1750 |
TCAAGTTGAT GTTTCCTGAG ATTGAGAAAG AGTGGTGTGA TTTCCACAAT | 1800 |
ATTGCCCAGT CCTCGTTCTA TCATGTGTCT GAGCTGTATG AAGATACACT | 1850 |
TAGCTCATTT CATCGTTTTA GACCTCAATT CATCAGTTCC TCTGATTCTC | 1900 |
AACCAACCTA TTACAATCCA TATGAATTTG ATCATACATG CTATATTGAG | 1950 |
TGCCAACCCT CTGAAGATAA ATATCTACAC TCTGAGGACG TAGATAACAA | 2000 |
TCAACCACCT CCTGAAGTAA GAAAATGTGT ATCAGTGCCG TTTGTTCCTC | 2050 |
CTAACGCATT CCAAGCAAAT GCTATTGCAG AAAACATGGC CAGTATTATC | 2100 |
AAAGAGATAA GAACTCAATG CACACCATCT GAATCTGATA ATGGCCATGG | 2150 |
AGCACTCGAA CCTGAGGATT ACGTTGAGTA TGGAGAGGCC CCAGTCTGTG | 2200 |
TATATTTTCT TAATGGATAT TGTAACCGTG GTGGCCAGTG CACGTTCACT | 2250 |
CATACTCTTC AGTCAACAAG ACCAGCCTGC AAATTTTTCG CATCATCGCA | 2300 |
GGGATGTCGA AATGGAGAAT CGTGTTTGTT TTCCCACGCC ATGCGACGAC | 2350 |
GGACAACATC ATACCTTCCA CCTCCCCAAT GCCTTCCAGA AGAAGATGGC | 2400 |
TCTTCCACAT CGCCCCTTCT GGATTTGTTT CCTACTTCTT CTGAGGGATG | 2450 |
TATCCTTGTG TTCGATGACT CTGACATGCA TTTCACCTCA AGTATAGCCA | 2500 |
ACCGTTATCC GTCCTGGAGA ATACTCTCAA CATCATCGTC TTCAGAGACG | 2550 |
CTTTTCTGTG ATTCATCACT TGCAGACACA AGAATCTTCT GGGGTCTCAA | 2600 |
TCATCCCTAC CAGACAATCA TCTCAAAAGC AGGAAGGGAG AACCCAATCC | 2650 |
CGTGGAACGA AGTGAAATGC GTGCTGTGGT TCCTTAACCC AGACAGCTAT | 2700 |
GCTGATACTC CTGAGAAGCA GAAAACTATT CTGCAGAATT TCTTCGAGCA | 2750 |
CATGGCAATC AGATTACTCG GCGATAAGCT TTACAAAATC CGAGTAGTTC | 2800 |
TCACAATGAA CAACGTCAGA TTCTCACTCT TACAGGTTGA GAAGCTAGCC | 2850 |
AGAGAAAGCT TCTTCTTCCT TGGAGAGTCT TTCCCACACG ATTCAGAAAG | 2900 |
CTTTGGTGCA TTCCAAGACA CATTAACAAT CCAGAAGCCT ATGCTAGTCT | 2950 |
CCAGACCAAT CTCCTATGTC TTTAATCTCC ATCCGCCTTC TGACATCCAG | 3000 |
TTTGGTAACT ACACCTCTCT TCTTCGCAAA TCTCTTCACA ACAAATGA | 3050 |
>AT2G47680.1 longest ORF length:1015
MAVSSPTSSS SSSESLPLPS SNFASLPIMA MKRRIIDKIL ENRVTLIVGE | 50 |
PGCGKSSQVP QFLLEANMAP ILCTQPRRFA VVAVAKMVAK SRNSDLGGEI | 100 |
GYHIGHSKIL TEGSKILFKT AGVLLDEMLD KGLNALKYKV IILDEVHERS | 150 |
VESDLVLVCV KQFLMKNNDL RVVLMSATAD ITRYRDYFKE LGRGERVEVV | 200 |
AIPSPDQRTI FQRRVLYLEQ VAGLLGVSSD LSAYCPGPSP SSADTEIKPE | 250 |
LQNLIHDLIL YIHEKEPDIE KSILVFLPTY YSLEQQYHQL EPFFASFEVH | 300 |
ILHRSIDTEQ ALAAMKICRS RRKVILATNI AESSVTIPKV AYVIDSCRSL | 350 |
QVFWDPSRKR DAVQLVWVSR SQAEQRRGRT GRTCDGEVYR LVPSAFFNKL | 400 |
EEHEPPSILK LSLRQQVLHI CCTESRAIND ANALLAKAMD PPDPDVVDDA | 450 |
LRMLLSIQAL RKSPRGRYEP TFYGRLLASF PLSFDASILV VKFGEMGMLR | 500 |
QGILLGVLMD TLPLPIHHPF GDDSLFLEYV DHYFGGSKTI SGGRREMVLM | 550 |
ANFCAFQFWQ RVFKDKHRLE NLKQLLSKEK DKDLKLMFPE IEKEWCDFHN | 600 |
IAQSSFYHVS ELYEDTLSSF HRFRPQFISS SDSQPTYYNP YEFDHTCYIE | 650 |
CQPSEDKYLH SEDVDNNQPP PEVRKCVSVP FVPPNAFQAN AIAENMASII | 700 |
KEIRTQCTPS ESDNGHGALE PEDYVEYGEA PVCVYFLNGY CNRGGQCTFT | 750 |
HTLQSTRPAC KFFASSQGCR NGESCLFSHA MRRRTTSYLP PPQCLPEEDG | 800 |
SSTSPLLDLF PTSSEGCILV FDDSDMHFTS SIANRYPSWR ILSTSSSSET | 850 |
LFCDSSLADT RIFWGLNHPY QTIISKAGRE NPIPWNEVKC VLWFLNPDSY | 900 |
ADTPEKQKTI LQNFFEHMAI RLLGDKLYKI RVVLTMNNVR FSLLQVEKLA | 950 |
RESFFFLGES FPHDSESFGA FQDTLTIQKP MLVSRPISYV FNLHPPSDIQ | 1000 |
FGNYTSLLRK SLHNK | 1050 |