|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G47850 | Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) |
>AT2G47850.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SalI, SpeI, StyI, XbaI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 361 |
| PstI | CTGCA|G | 62 |
| PvuII | CAG|CTG | 1175 |
| SacI | GAGCT|C | 1152, 1201, 1341 |
| SmaI | CCC|GGG | 661, 799, 1005 |
| XhoI | C|TCGAG | 944, 1332 |
Click here to view TAIR data
>AT2G47850.1 length:1407
ATGTATGCTC GCAATCCTCC CCTCAATGGC TCACAATCTG CTCAAGCTCC | 50 |
CGACTGGACC CCTGCAGATG CCGATACCGG ACTCCAAGAA TCGATGTGGC | 100 |
GATTAGGGTT GGGTAGCGAC TCGTACCCTG AGAGACCAGG TGCTCCTGAC | 150 |
TGTGCCTACT ACATGCGAAC TGGTGTCTGT GGCTACGGTA ATAGATGTCG | 200 |
TTACAATCAC CCTCGCGATC GTGCCTCGGT TGAAGCAACT GTTAGAGCTA | 250 |
CCGGGCAGTA TCCTGAACGT TTTGGTGAAC CCCCATGCCA GTTTTACTTG | 300 |
AAAACTGGAA CTTGTAAATT TGGGGCGTCA TGCAAATTCC ACCATCCAAA | 350 |
GAATGCAGGT GGATCCATGA GCCACGTTCC ACTAAATATA TATGGATACC | 400 |
CTGTACGAGA GGGTGATAAC GAATGCTCCT ACTATTTGAA AACGGGGCAA | 450 |
TGCAAATTTG GTATAACCTG TAAATTTCAT CATCCTCAGC CTGCTGGTAC | 500 |
TACTGTCCCA CCACCACCAG CATCTGCACC TCAGTTTTAT CCATCGGTGC | 550 |
AGTCACTTAT GCCTGACCAG TATGGAGGTC CATCTTCTAG CTTGAGAGTT | 600 |
GCAAGAACTC TTCTTCCTGG TTCTTATATG CAAGGCGCCT ATGGTCCAAT | 650 |
GCTATTAACC CCCGGGGTCG TTCCTATTCC AGGCTGGAGT CCTTACTCGG | 700 |
CACCTGTGAG CCCTGCTCTA TCTCCTGGTG CGCAGCACGC TGTTGGGGCA | 750 |
ACTTCTTTAT ATGGAGTTAC ACAGCTCACT TCCACCACTC CTTCGCTTCC | 800 |
CGGGGTTTAT CCATCTCTGT CCTCTCCTAC AGGTGTTATA CAGAAAGAAC | 850 |
AGGCCTTTCC AGAGAGACCT GGTGAACCAG AGTGCCAATA CTATTTGAAA | 900 |
ACAGGAGATT GTAAGTTTGG AACATCTTGT AAGTTTCATC ATCCTCGAGA | 950 |
TCGGGTTCCA CCAAGAGCGA ATTGCGTCCT CAGCCCCATT GGTCTTCCTC | 1000 |
TACGCCCGGG TGTGCAACGG TGCACTTTCT ACGTACAAAA CGGCTTCTGT | 1050 |
AAGTTTGGAT CAACATGTAA GTTTGATCAT CCAATGGGAA CGATCAGATA | 1100 |
CAATCCTTCT GCGTCCTCTC TAGCTGATGC ACCGGTGGCT CCTTACCCAG | 1150 |
TGAGCTCTCT CTTGGGTGCT CTGGCAGCTG CCCCTTCTTC TTCATCGACA | 1200 |
GAGCTCATAG CAGGCGGTGC AAAAGATGCT TACATGACCG GTGTGCCTAC | 1250 |
ATCAAGAAGC ACATCAAACA TCTCGGCAGG TTTGATTTTC TCCCAGAGCG | 1300 |
GTGGGTCAAT TCCATTCTCA GAGCTGCAAC TCTCGAGCCA GAGCTCTCTT | 1350 |
CCTCTAACAG GTAGCAGAAT CACAAGACAA GGGCGTGAAA TTCGTCGATC | 1400 |
CTTTTGA | 1450 |
>AT2G47850.1 longest ORF length:468
MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD | 50 |
CAYYMRTGVC GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL | 100 |
KTGTCKFGAS CKFHHPKNAG GSMSHVPLNI YGYPVREGDN ECSYYLKTGQ | 150 |
CKFGITCKFH HPQPAGTTVP PPPASAPQFY PSVQSLMPDQ YGGPSSSLRV | 200 |
ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL SPGAQHAVGA | 250 |
TSLYGVTQLT STTPSLPGVY PSLSSPTGVI QKEQAFPERP GEPECQYYLK | 300 |
TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQR CTFYVQNGFC | 350 |
KFGSTCKFDH PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAAAPSSSST | 400 |
ELIAGGAKDA YMTGVPTSRS TSNISAGLIF SQSGGSIPFS ELQLSSQSSL | 450 |
PLTGSRITRQ GREIRRSF | 500 |