fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G47890 COL13 B-box type zinc finger protein with CCT domain (.1.2)

>AT2G47890.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 535
SpeI A|CTAGT 817
StyI C|C[AT][AT]GG 980


Click here to view TAIR data

>AT2G47890.1 length:999
ATGGAAGCAG AAGAAGGTCA TCAGCGTGAC CGCCTCTGCG ACTATTGCGA 
50
CTCCTCCGTG GCTCTTGTCT ACTGCAAAGC TGACTCCGCC AAGCTCTGCC 
100
TCGCCTGCGA CAAGCAAGTC CACGTCGCCA ACCAACTCTT CGCCAAACAC 
150
TTCAGGTCAC TTCTCTGCGA CTCCTGCAAC GAATCTCCCT CTTCCCTTTT 
200
CTGCGAGACT GAAAGGTCTG TTCTTTGCCA GAACTGCGAC TGGCAACACC 
250
ACACCGCCTC TTCCTCCCTT CATAGCCGCA GACCCTTTGA AGGATTTACC 
300
GGCTGTCCCT CCGTGCCTGA GTTGCTGGCC ATCGTTGGCC TCGATGACCT 
350
CACTCTCGAT TCCGGATTGC TTTGGGAGTC ACCTGAGATC GTTAGCCTCA 
400
ACGACCTTAT TGTTTCGGGC GGGTCGGGTA CTCATAACTT CCGGGCCACG 
450
GATGTTCCTC CTCTGCCTAA GAATCGTCAC GCCACCTGCG GGAAATACAA 
500
AGATGAGATG ATCCGACAGC TCCGTGGACT ATCCAGATCT GAGCCTGGTT 
550
GTCTGAAATT TGAAACCCCA GATGCTGAGA TCGATGCCGG GTTCCAATTC 
600
CTAGCGCCGG ATTTGTTTTC TACATGCGAG CTGGAGAGTG GACTGAAATG 
650
GTTCGATCAG CAAGATCATG AGGACTTTCC ATATTGCTCT CTGCTAAAGA 
700
ACTTGTCGGA GTCAGATGAG AAACCTGAGA ATGTAGACCG AGAGTCATCG 
750
GTGATGGTTC CCGTTTCCGG CTGCTTAAAC CGATGTGAGG AAGAGACTGT 
800
GATGGTTCCG GTTATCACTA GTACAAGGTC GATGACACAT GAGATCAACA 
850
GTCTTGAGAG GAACTCTGCT CTCTCTCGCT ACAAAGAAAA GAAGAAGTCT 
900
CGAAGGTACG AGAAACACAT CAGGTATGAA TCACGCAAGG TTCGTGCAGA 
950
AAGCAGGACA AGAATCAGGG GACGTTTCGC CAAGGCAGCA GATCCATGA
1000

>AT2G47890.1 longest ORF length:332
MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH 
50
FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT 
100
GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT 
150
DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF 
200
LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS 
250
VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS 
300
RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
350