fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G47890 COL13 B-box type zinc finger protein with CCT domain (.1.2)

>AT2G47890.2 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 535


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>AT2G47890.2 length:714
ATGGAAGCAG AAGAAGGTCA TCAGCGTGAC CGCCTCTGCG ACTATTGCGA 
50
CTCCTCCGTG GCTCTTGTCT ACTGCAAAGC TGACTCCGCC AAGCTCTGCC 
100
TCGCCTGCGA CAAGCAAGTC CACGTCGCCA ACCAACTCTT CGCCAAACAC 
150
TTCAGGTCAC TTCTCTGCGA CTCCTGCAAC GAATCTCCCT CTTCCCTTTT 
200
CTGCGAGACT GAAAGGTCTG TTCTTTGCCA GAACTGCGAC TGGCAACACC 
250
ACACCGCCTC TTCCTCCCTT CATAGCCGCA GACCCTTTGA AGGATTTACC 
300
GGCTGTCCCT CCGTGCCTGA GTTGCTGGCC ATCGTTGGCC TCGATGACCT 
350
CACTCTCGAT TCCGGATTGC TTTGGGAGTC ACCTGAGATC GTTAGCCTCA 
400
ACGACCTTAT TGTTTCGGGC GGGTCGGGTA CTCATAACTT CCGGGCCACG 
450
GATGTTCCTC CTCTGCCTAA GAATCGTCAC GCCACCTGCG GGAAATACAA 
500
AGATGAGATG ATCCGACAGC TCCGTGGACT ATCCAGATCT GAGCCTGGTT 
550
GTCTGAAATT TGAAACCCCA GATGCTGAGA TCGATGCCGG GTTCCAATTC 
600
CTAGCGCCGG ATTTGTTTTC TACATGCGAG CTGGTAATAG AGACTGCTAT 
650
TGGTTGTGTT TTCTTGTGCT TGTCAAATGA TTTTCCAGCT TATAAATCTC 
700
TCTTGTCAAT ATGA
750

>AT2G47890.2 longest ORF length:237
MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH 
50
FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT 
100
GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT 
150
DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF 
200
LAPDLFSTCE LVIETAIGCV FLCLSNDFPA YKSLLSI
250