fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G47900 AtTLP3 tubby like protein 3 (.1.2.3)

>AT2G47900.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 565
EcoRI G|AATTC 683
HindIII A|AGCTT 559
NdeI CA|TATG 719
PstI CTGCA|G 258, 1073
PvuII CAG|CTG 791, 1045
SacI GAGCT|C 172
XhoI C|TCGAG 533


Click here to view TAIR data

>AT2G47900.2 length:1221
ATGTCCTTCA AGAGTCTCAT TCAGGACATG AGAGGAGAGC TTGGGAGTAT 
50
ATCCAGAAAG GGATTCGATG TCAGATTCGG GTATGGTAGA TCCAGGTCTC 
100
AACGTGTTGT TCAGGATACT TCTGTTCCTG TTGATGCTTT CAAGCAGAGC 
150
TGCTGGGCTA GTATGCCTCC GGAGCTCCTG AGAGATGTTC TTATGAGGAT 
200
TGAGCAATCC GAAGACACTT GGCCGTCTAG GAAAAATGTT GTTTCTTGCG 
250
CTGGTGTCTG CAGGAACTGG CGAGAAATCG TCAAAGAGAT CGTCAGAGTT 
300
CCTGAGCTTT CTAGCAAACT CACTTTTCCT ATCTCCCTCA AACAGCCGGG 
350
TCCTAGAGGA TCACTTGTTC AATGCTATAT TATGAGAAAC CGCAGCAATC 
400
AAACCTACTA TCTATACCTC GGGTTAAACC AAGCAGCTTC AAATGATGAT 
450
GGAAAGTTCC TTCTTGCTGC CAAGAGGTTT CGGAGGCCAA CTTGCACTGA 
500
CTACATCATC TCCTTAAACT GCGATGATGT CTCTCGAGGA AGCAATACCT 
550
ATATCGGAAA GCTTAGATCT AACTTTCTGG GGACCAAGTT CACTGTCTAT 
600
GACGCTCAGC CGACGAATCC TGGAACTCAG GTTACCAGAA CCCGTTCAAG 
650
CAGACTTCTC AGTTTGAAAC AAGTGAGCCC GAGAATTCCA TCTGGCAACT 
700
ATCCTGTAGC ACATATCTCA TATGAGCTTA ACGTCTTGGG TTCCAGAGGA 
750
CCGAGGAGGA TGCAGTGTGT CATGGATGCC ATCCCTGCAT CAGCTGTAGA 
800
ACCTGGAGGA ACAGCTCCAA CTCAGACGGA ACTTGTCCAT AGCAATCTTG 
850
ATAGTTTCCC CTCATTCTCC TTCTTCAGGT CGAAATCAAT TCGTGCAGAG 
900
AGTCTCCCTT CTGGTCCATC ATCTGCTGCT CAGAAGGAAG GACTGCTTGT 
950
CCTGAAAAAC AAAGCGCCCA GATGGCACGA ACAGCTCCAG TGCTGGTGCC 
1000
TCAACTTCAA TGGGAGAGTC ACAGTTGCTT CCGTCAAAAA CTTTCAGCTG 
1050
GTAGCTGCTC CTGAGAATGG ACCTGCAGGA CCTGAGCACG AAAACGTGAT 
1100
TCTCCAGTTT GGAAAAGTCG GAAAAGATGT GTTCACAATG GATTATCAGT 
1150
ACCCTATCTC TGCCTTCCAG GCCTTCACCA TTTGCCTCAG CAGTTTCGAC 
1200
ACCAAGATAG CATGTGAATG A
1250

>AT2G47900.2 longest ORF length:406
MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS 
50
CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV 
100
PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD 
150
GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY 
200
DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG 
250
PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE 
300
SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL 
350
VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD 
400
TKIACE
450