fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G48100 Exonuclease family protein (.1.2.3.4)

>AT2G48100.4 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 697


Click here to view TAIR data

>AT2G48100.4 length:729
ATGGATTCTC AGTTGAATCC TTCCAAGAGA CGCAAGATAA GTGTCAGGCA 
50
CAGATGCGTT GCGTGCTATA AGATGTTCAA TAGACGAGAA CACCTCGTTG 
100
AGCACATGAA GATTTCCTAC CACTCACTTC ACCAGCCTCG CTGTGGGGTT 
150
TGCCTCAAGC ACTGTAAATC CTTCGAATCC GTGAGGGAAC ACCTTAACGT 
200
TCCAGACCAT CTTTCCAAAG GAAACTGCAA AGCCATTTTC ACTAAACGAG 
250
GCTGTACTCT CTGTCTTCAA ATCTTTGAGG AGGCCTTTGC TCTCGCCGAG 
300
CATAAAAACA AGTGTCACCT CTCCCCACCT CGTCCTCTTG GAACATCTAC 
350
CCAAAGGAAT CCTTCTAGTT CACTTGCTGG TTCACGTCTC AAGGCTATGG 
400
CACTTGACTG TGAAATGGTT GGTGGTGGTG CTGATGGGAC TATTGATCAG 
450
TGCGCATCGG TTTGCCTGGT TGACGATGAC GAGAATGTGA TCTTCTCCAC 
500
TCACGTTCAA CCACTGCTCC CTGTCACCGA TTACAGGCAC GAGATAACTG 
550
GATTGACTAA GGAAGATTTG AAGGATGGTA TGCCACTTGA GCATGTACGA 
600
GAGAGAGTTT TTTCGTTCTT GTGCGGTGGA CAGAATGATG GGGCTGGAAG 
650
GCTTCTTCTT GTTGGTCATG ACCTTAGGCA TGATATGAGT TGCTTGAAGC 
700
TTGAATACCC TAGCCATTTG TTGAGGTAA
750

>AT2G48100.4 longest ORF length:242
MDSQLNPSKR RKISVRHRCV ACYKMFNRRE HLVEHMKISY HSLHQPRCGV 
50
CLKHCKSFES VREHLNVPDH LSKGNCKAIF TKRGCTLCLQ IFEEAFALAE 
100
HKNKCHLSPP RPLGTSTQRN PSSSLAGSRL KAMALDCEMV GGGADGTIDQ 
150
CASVCLVDDD ENVIFSTHVQ PLLPVTDYRH EITGLTKEDL KDGMPLEHVR 
200
ERVFSFLCGG QNDGAGRLLL VGHDLRHDMS CLKLEYPSHL LR
250