|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G01470 | HD-ZIP-1, HAT5, ATHB1, ATHB-1 | HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) |
>AT3G01470.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstEII, BstZ17I, BtgI, BtrI, BtsI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 745 |
| AccI | GT|[AC][TG]AC | 308 |
| AccII(FnuDII) | CG|CG | 619 |
| AgeI | A|CCGGT | 593 |
| AluI | AG|CT | 146, 245, 264, 288, 300, 349, 369, 453, 486, 508, 656, 731 |
| AseI | AT|TAAT | 565 |
| AvaII | G|G[AT]CC | 590 |
| BanII | GPuGCPy|C | 350 |
| BclI | T|GATCA | 714 |
| BfaI | C|TAG | 266, 626, 650 |
| BsaHI | GPu|CGPyC | 745 |
| BsaJI | C|CNNGG | 60, 84, 316, 464, 587 |
| BsaWI | [AT]|CCGG[AT] | 555, 593, 728 |
| BsiHKAI | G[AT]GC[AT]|C | 350 |
| BslI | CCNNNNN|NNGG | 592 |
| Bsp1286I | G[GAT]GC[CAT]|C | 350, 532, 754 |
| BspDI | AT|CGAT | 102 |
| BspHI | T|CATGA | 717 |
| BsrFI | Pu|CCGGPy | 593 |
| BssKI | |CCNGG | 522 |
| BstBI | TT|CGAA | 126 |
| BstF5I | GGATGNN| | 809 |
| BstNI | CC|[AT]GG | 522 |
| BstUI | CG|CG | 619 |
| BstXI | CCANNNNN|NTGG | 440 |
| BstYI | Pu|GATCPy | 159, 460 |
| Bsu36I | CC|TNAGG | 155 |
| Cac8I | GCN|NGC | 291 |
| Cfr10I | [AG]|CCGG[TC] | 593 |
| ClaI | AT|CGAT | 102 |
| DdeI | C|TNAG | 154, 286, 456, 814 |
| DpnI | GA-CH3|TC | 23, 99, 158, 386, 459, 551, 713, 776 |
| DpnII | |GATC | 23, 99, 158, 386, 459, 551, 713, 776 |
| DrdI | GACNNNN|NNGTC | 436 |
| EcoO109I | PuG|GNCCPy | 137 |
| Fnu4HI | GC|NGC | 570 |
| HaeIII | GG|CC | 135, 810 |
| HhaI | GCG|C | 618 |
| HinP1I | G|CGC | 618 |
| HindIII | A|AGCTT | 246, 301, 487 |
| HinfI | G|ANTC | 3, 65, 284, 341, 429, 663, 789 |
| HpaII | C|CGG | 554, 592, 727 |
| Hpy188I | TCN|GA | 338, 457, 462 |
| Hpy99I | CG[AT]CG| | 77, 167, 182, 207, 632, 743, 769 |
| HpyCH4III | ACN|GT | 767, 784 |
| HpyCH4IV | A|CGT | 744 |
| HpyCH4V | TG|CA | 228 |
| MboI | |GATC | 23, 99, 158, 386, 459, 551, 713, 776 |
| MseI | T|TAA | 564, 596 |
| MslI | CAPyNN|NNPuTG | 439, 722, 785 |
| MspA1I | C[AC]G|C[GT]G | 657 |
| MspI | C|CGG | 554, 592, 727 |
| MwoI | GCNNNNN|NNGC | 616 |
| NlaIII | CATG| | 49, 112, 439, 716 |
| NspI | PuCATG|Py | 50 |
| PspGI | |CC[AT]GG | 522 |
| PvuII | CAG|CTG | 657 |
| RsaI | GT|AC | 623, 683 |
| SacI | GAGCT|C | 350 |
| Sau3AI | |GATC | 23, 99, 158, 386, 459, 551, 713, 776 |
| Sau96I | G|GNCC | 136, 590 |
| ScrFI | CC|NGG | 522 |
| SexAI | A|CC[AT]GGT | 523 |
| SfcI | C|TPuPyAG | 310 |
| SmlI | C|TPyPuAG | 373, 394 |
| StyI | C|C[AT][AT]GG | 60, 84, 316 |
| Taqƒ¿I | T|CGA | 21, 101, 125, 249 |
| TfiI | G|A[AT]TC | 3, 65, 341, 789 |
| TseI | G|C[AT]GC | 573 |
| Tsp45I | |GT[CG]AC | 661 |
| Tsp509I | |AATT | 8 |
| TspRI | NNCA[CG]TGNN| | 712 |
| XmnI | GAANN|NNTTC | 247, 488 |
Click here to view TAIR data
>AT3G01470.1 length:819
ATGGAATCCA ATTCGTTTTT CTTCGATCCA TCTGCTTCAC ACGGCAACAG | 50 |
CATGTTCTTC CTTGGGAATC TCAATCCCGT CGTCCAAGGA GGAGGAGCAA | 100 |
GATCGATGAT GAACATGGAG GAAACTTCGA AGCGAAGGCC CTTCTTTAGC | 150 |
TCCCCTGAGG ATCTCTACGA CGATGACTTT TACGACGACC AGTTGCCTGA | 200 |
AAAGAAGCGT CGCCTCACTA CCGAACAAGT GCATCTGCTG GAGAAAAGCT | 250 |
TCGAGACAGA GAACAAGCTA GAGCCTGAAC GCAAGACTCA GCTTGCCAAG | 300 |
AAGCTTGGTC TACAGCCAAG GCAAGTGGCT GTCTGGTTTC AGAATCGCCG | 350 |
AGCTCGTTGG AAAACAAAAC AGCTTGAGAG AGACTACGAT CTTCTCAAGT | 400 |
CCACTTACGA CCAACTTCTT TCTAACTACG ACTCCATCGT CATGGACAAC | 450 |
GATAAGCTCA GATCCGAGGT TACTTCCCTG ACCGAAAAGC TTCAGGGCAA | 500 |
ACAAGAGACA GCTAATGAAC CACCTGGTCA AGTGCCCGAA CCAAACCAAC | 550 |
TTGATCCGGT TTACATTAAT GCGGCAGCAA TCAAAACCGA GGACCGGTTA | 600 |
AGTTCAGGGA GCGTTGGGAG CGCGGTACTA GACGACGACG CACCTCAACT | 650 |
ACTAGACAGC TGTGACTCTT ACTTCCCAAG CATCGTACCC ATCCAAGACA | 700 |
ACAGCAACGC CAGTGATCAT GACAATGACC GGAGCTGTTT CGCCGACGTC | 750 |
TTTGTGCCCA CCACTTCACC GTCGCACGAT CATCACGGTG AATCATTGGC | 800 |
TTTCTGGGGA TGGCCTTAG | 850 |
>AT3G01470.1 longest ORF length:272
MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS | 50 |
SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK | 100 |
KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN | 150 |
DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL | 200 |
SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV | 250 |
FVPTTSPSHD HHGESLAFWG WP | 300 |