fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G02380 ATCOL2, COL2 CONSTANS-like 2 (.1)

>AT3G02380.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
NcoI C|CATGG 332
NdeI CA|TATG 914
PvuII CAG|CTG 197
SacI GAGCT|C 641
StyI C|C[AT][AT]GG 332
XhoI C|TCGAG 122


Click here to view TAIR data

>AT3G02380.1 length:1044
ATGTTGAAAG AAGAGAGTAA TGAGAGTGGT ACTTGGGCAC GAGCATGTGA 
50
CACTTGTCGT TCAGCCGCCT GCACTGTCTA CTGTGAAGCC GACTCTGCCT 
100
ACTTGTGCAC CACCTGTGAT GCTCGAGTTC ACGCAGCCAA CCGTGTTGCT 
150
TCTCGCCATG AACGTGTTCG TGTCTGTCAG TCATGTGAGT CTGCCCCAGC 
200
TGCGTTTTTG TGTAAAGCAG ACGCTGCGTC TCTTTGTACA GCTTGTGATG 
250
CAGAGATTCA TTCCGCAAAC CCACTAGCTA GACGTCATCA GCGAGTTCCG 
300
ATTCTTCCAT TATCTGCAAA CTCTTGCAGC TCCATGGCCC CAAGTGAGAC 
350
TGATGCTGAT AACGATGAGG ATGATCGAGA GGTTGCTTCG TGGTTACTCC 
400
CTAATCCAGG GAAAAACATC GGTAATCAGA ATAATGGGTT CTTGTTTGGT 
450
GTTGAGTACC TTGATCTTGT GGATTACAGC TCCAGCATGG ACAACCAATT 
500
CGAAGATAAT CAGTACACTC ACTACCAGAG GAGCTTTGGA GGAGATGGAG 
550
TTGTGCCGCT TCAAGTTGAA GAATCAACAA GTCACCTGCA ACAAAGCCAA 
600
CAAAACTTTC AGTTGGGTAT CAACTATGGA TTCTCCTCAG GAGCTCACTA 
650
CAACAACAAC TCCTTAAAGG ACCTAAACCA TAGCGCATCC GTTTCATCAA 
700
TGGACATCAG TGTTGTGCCA GAGTCAACTG CAAGTGACAT AACAGTCCAA 
750
CACCCAAGAA CTACTAAAGA GACGATAGAC CAACTATCTG GTCCTCCTAC 
800
TCAGGTGGTG CAACAGCTTA CTCCAATGGA GAGGGAGGCT AGGGTCCTGA 
850
GATACAGAGA GAAGAAGAAG ACAAGGAAAT TTGACAAGAC AATAAGATAT 
900
GCTTCAAGAA AGGCATATGC AGAGATAAGA CCACGGATCA AGGGCAGATT 
950
CGCAAAGAGG ATAGAAACTG AAGCTGAGGC TGAAGAAATC TTCTCAACAT 
1000
CGCTAATGTC TGAGACTGGA TATGGAATTG TCCCTTCCTT CTAA
1050

>AT3G02380.1 longest ORF length:347
MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA 
50
SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP 
100
ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG 
150
VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ 
200
QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ 
250
HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY 
300
ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
350