fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G02550 LBD41 LOB domain-containing protein 41 (.1)

>AT3G02550.1 CDS map

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Uncut enzymes: AatII, AccI, AccIII(BspMII), AclI, AfeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BsrBI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuII, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
Acc65I G|GTACC 711
AccII(FnuDII) CG|CG 421, 487
AciI C|CGC 365, 417
AflII C|TTAAG 373
AflIII A|CPuPyGT 748, 766
AgeI A|CCGGT 321, 687
AluI AG|CT 8, 100, 214, 279, 660, 777
AlwNI CAGNNN|CTG 344
AvaII G|G[AT]CC 168, 363
BanI G|GPyPuCC 711
BanII GPuGCPy|C 645
BfaI C|TAG 525
BglI GCCNNNN|NGGC 300, 423
BglII A|GATCT 377
BlpI GC|TNAGC 470
BsaAI PyAC|GTPu 695, 747, 765
BsaHI GPu|CGPyC 292
BsaJI C|CNNGG 187, 296, 360, 401, 422
BsaWI [AT]|CCGG[AT] 321, 687
BsiEI CGPuPy|CG 199, 353
BsiHKAI G[AT]GC[AT]|C 762
BslI CCNNNNN|NNGG 243
Bsp1286I G[GAT]GC[CAT]|C 645, 762
BspHI T|CATGA 149, 573
BspT107I(HgiCI) G|G[TC][AG]CC 711
BsrDI GCAATGNN| 604
BsrFI Pu|CCGGPy 166, 321, 687
BsrI ACTGGN| 430
BssKI |CCNGG 186
BstF5I GGATGNN| 6, 20, 406
BstNI CC|[AT]GG 186
BstUI CG|CG 421, 487
BstYI Pu|GATCPy 377
BtgI C|CPuPyGG 296, 422
Cac8I GCN|NGC 99
Cfr10I [AG]|CCGG[TC] 166, 321, 687
DdeI C|TNAG 469, 610, 775
DpnI GA-CH3|TC 79, 198, 238, 331, 352, 376, 730
DpnII |GATC 79, 198, 238, 331, 352, 376, 730
EaeI Py|GGCCPu 135, 357
Fnu4HI GC|NGC 278, 345, 417, 423, 567
HaeIII GG|CC 63, 134, 356
HhaI GCG|C 95
HinP1I G|CGC 95
HindIII A|AGCTT 215, 661
HinfI G|ANTC 145, 233, 501, 534, 545, 591
HpaII C|CGG 165, 320, 632, 648, 686
Hpy188I TCN|GA 32, 196, 236, 388, 504, 516, 555, 594, 609, 752
Hpy99I CG[AT]CG| 349, 485, 538
HpyCH4III ACN|GT 111, 483
HpyCH4IV A|CGT 694, 746, 764
HpyCH4V TG|CA 20, 207
KpnI GGTAC|C 711
MboI |GATC 79, 198, 238, 331, 352, 376, 730
MseI T|TAA 372, 674, 717
MspA1I C[AC]G|C[GT]G 422
MspI C|CGG 165, 320, 632, 648, 686
MwoI GCNNNNN|NNGC 95, 300, 342, 423, 495, 742
N.BstNBI GAGTCNNNN|N 550
NlaIII CATG| 148, 572, 704
NlaIV GGN|NCC 169, 646, 711
NruI TCG|CGA 488
PmlI CAC|GTG 695, 747, 765
PspGI |CC[AT]GG 186
PvuI CGAT|CG 199, 353
RsaI GT|AC 710
SacII CCGC|GG 422
Sau3AI |GATC 79, 198, 238, 331, 352, 376, 730
Sau96I G|GNCC 168, 363
ScrFI CC|NGG 186
SmlI C|TPyPuAG 373
StyI C|C[AT][AT]GG 360, 401
Taqƒ¿I T|CGA 681
TfiI G|A[AT]TC 233, 501, 534, 591
TseI G|C[AT]GC 278, 345, 567
Tsp45I |GT[CG]AC 529, 692
Tsp509I |AATT 272


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>AT3G02550.1 length:792
ATGCGGATGA GCTGTAATGG ATGCAGAGTT CTTCGGAAAG GGTGTAGTGA 
50
GGATTGTAGT ATAAGGCCGT GTTTGGCTTG GATCAAATCG CCTGAAGCGC 
100
AAGCTAACGC AACTGTCTTT CTCGCCAAGT TCTATGGCCG TGCTGGACTC 
150
ATGAACCTCA TCAACGCCGG TCCCAATCAC CTTCGTCCTG GGATTTTCCG 
200
ATCGTTGTTG CACGAAGCTT GTGGGAGGAT TGTGAATCCG ATCTATGGTT 
250
CGGTGGGTTT GTTGTGGTCG GGGAATTGGC AGCTTTGTCA AGACGCCGTG 
300
GAGGCTGTGA TGAAAGGAGA ACCGGTCAAA GAGATCGCCA CAGACGCTGC 
350
GACGATCGGC CAAGGTCCGC CTCTTAAGAT CTACGACATC CGACATATCT 
400
CCAAGGATGA TAACTCTGCC GCCGCGGCTA CTGGCTCAAC CGATTTGAAA 
450
CTTGCGAAAA CTCGCCGTGC TAAGCGGGTC TCCACCGTCG CGATACAGGC 
500
GGAATCGGAG GGAAAGTCTG ACGAGGCTAG TCACGATTCG TCGTTGAGTC 
550
ATCAGTCTGA AATAGTGGCT GCTCATGAAG GAGAGAGCAA GGAATCCGAG 
600
AGCAATGTCT CTGAGGTTTT GGCATTCTCG CCTCCGGCTG TGAAGGGCTC 
650
CGGCGAGATA AAGCTTGACC TAACTTTAAG GCTCGAACCG GTGTCACGTG 
700
CGTATCATGT GGTACCTGTT AAGAAGAGAA GGATCGGCGT GTTTGGCACG 
750
TGTCAGAAGG AGAGCACGTG TAAGACTGAG CTTATGCTCT AA
800

>AT3G02550.1 longest ORF length:263
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL 
50
MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV 
100
EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK 
150
LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE 
200
SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT 
250
CQKESTCKTE LML
300