Locus |
Common name |
Short description |
AT3G02550 |
LBD41 |
LOB domain-containing protein 41 (.1) |
>AT3G02550.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, AccI, AccIII(BspMII), AclI, AfeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BsrBI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuII, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
Acc65I
| G|GTACC |
711 |
AccII(FnuDII)
| CG|CG |
421, 487 |
AciI
| C|CGC |
365, 417 |
AflII
| C|TTAAG |
373 |
AflIII
| A|CPuPyGT |
748, 766 |
AgeI
| A|CCGGT |
321, 687 |
AluI
| AG|CT |
8, 100, 214, 279, 660, 777 |
AlwNI
| CAGNNN|CTG |
344 |
AvaII
| G|G[AT]CC |
168, 363 |
BanI
| G|GPyPuCC |
711 |
BanII
| GPuGCPy|C |
645 |
BfaI
| C|TAG |
525 |
BglI
| GCCNNNN|NGGC |
300, 423 |
BglII
| A|GATCT |
377 |
BlpI
| GC|TNAGC |
470 |
BsaAI
| PyAC|GTPu |
695, 747, 765 |
BsaHI
| GPu|CGPyC |
292 |
BsaJI
| C|CNNGG |
187, 296, 360, 401, 422 |
BsaWI
| [AT]|CCGG[AT] |
321, 687 |
BsiEI
| CGPuPy|CG |
199, 353 |
BsiHKAI
| G[AT]GC[AT]|C |
762 |
BslI
| CCNNNNN|NNGG |
243 |
Bsp1286I
| G[GAT]GC[CAT]|C |
645, 762 |
BspHI
| T|CATGA |
149, 573 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
711 |
BsrDI
| GCAATGNN| |
604 |
BsrFI
| Pu|CCGGPy |
166, 321, 687 |
BsrI
| ACTGGN| |
430 |
BssKI
| |CCNGG |
186 |
BstF5I
| GGATGNN| |
6, 20, 406 |
BstNI
| CC|[AT]GG |
186 |
BstUI
| CG|CG |
421, 487 |
BstYI
| Pu|GATCPy |
377 |
BtgI
| C|CPuPyGG |
296, 422 |
Cac8I
| GCN|NGC |
99 |
Cfr10I
| [AG]|CCGG[TC] |
166, 321, 687 |
DdeI
| C|TNAG |
469, 610, 775 |
DpnI
| GA-CH3|TC |
79, 198, 238, 331, 352, 376, 730 |
DpnII
| |GATC |
79, 198, 238, 331, 352, 376, 730 |
EaeI
| Py|GGCCPu |
135, 357 |
Fnu4HI
| GC|NGC |
278, 345, 417, 423, 567 |
HaeIII
| GG|CC |
63, 134, 356 |
HhaI
| GCG|C |
95 |
HinP1I
| G|CGC |
95 |
HindIII
| A|AGCTT |
215, 661 |
HinfI
| G|ANTC |
145, 233, 501, 534, 545, 591 |
HpaII
| C|CGG |
165, 320, 632, 648, 686 |
Hpy188I
| TCN|GA |
32, 196, 236, 388, 504, 516, 555, 594, 609, 752 |
Hpy99I
| CG[AT]CG| |
349, 485, 538 |
HpyCH4III
| ACN|GT |
111, 483 |
HpyCH4IV
| A|CGT |
694, 746, 764 |
HpyCH4V
| TG|CA |
20, 207 |
KpnI
| GGTAC|C |
711 |
MboI
| |GATC |
79, 198, 238, 331, 352, 376, 730 |
MseI
| T|TAA |
372, 674, 717 |
MspA1I
| C[AC]G|C[GT]G |
422 |
MspI
| C|CGG |
165, 320, 632, 648, 686 |
MwoI
| GCNNNNN|NNGC |
95, 300, 342, 423, 495, 742 |
N.BstNBI
| GAGTCNNNN|N |
550 |
NlaIII
| CATG| |
148, 572, 704 |
NlaIV
| GGN|NCC |
169, 646, 711 |
NruI
| TCG|CGA |
488 |
PmlI
| CAC|GTG |
695, 747, 765 |
PspGI
| |CC[AT]GG |
186 |
PvuI
| CGAT|CG |
199, 353 |
RsaI
| GT|AC |
710 |
SacII
| CCGC|GG |
422 |
Sau3AI
| |GATC |
79, 198, 238, 331, 352, 376, 730 |
Sau96I
| G|GNCC |
168, 363 |
ScrFI
| CC|NGG |
186 |
SmlI
| C|TPyPuAG |
373 |
StyI
| C|C[AT][AT]GG |
360, 401 |
Taqƒ¿I
| T|CGA |
681 |
TfiI
| G|A[AT]TC |
233, 501, 534, 591 |
TseI
| G|C[AT]GC |
278, 345, 567 |
Tsp45I
| |GT[CG]AC |
529, 692 |
Tsp509I
| |AATT |
272 |
Click here to view TAIR data
>AT3G02550.1 length:792
ATGCGGATGA GCTGTAATGG ATGCAGAGTT CTTCGGAAAG GGTGTAGTGA | 50 |
GGATTGTAGT ATAAGGCCGT GTTTGGCTTG GATCAAATCG CCTGAAGCGC | 100 |
AAGCTAACGC AACTGTCTTT CTCGCCAAGT TCTATGGCCG TGCTGGACTC | 150 |
ATGAACCTCA TCAACGCCGG TCCCAATCAC CTTCGTCCTG GGATTTTCCG | 200 |
ATCGTTGTTG CACGAAGCTT GTGGGAGGAT TGTGAATCCG ATCTATGGTT | 250 |
CGGTGGGTTT GTTGTGGTCG GGGAATTGGC AGCTTTGTCA AGACGCCGTG | 300 |
GAGGCTGTGA TGAAAGGAGA ACCGGTCAAA GAGATCGCCA CAGACGCTGC | 350 |
GACGATCGGC CAAGGTCCGC CTCTTAAGAT CTACGACATC CGACATATCT | 400 |
CCAAGGATGA TAACTCTGCC GCCGCGGCTA CTGGCTCAAC CGATTTGAAA | 450 |
CTTGCGAAAA CTCGCCGTGC TAAGCGGGTC TCCACCGTCG CGATACAGGC | 500 |
GGAATCGGAG GGAAAGTCTG ACGAGGCTAG TCACGATTCG TCGTTGAGTC | 550 |
ATCAGTCTGA AATAGTGGCT GCTCATGAAG GAGAGAGCAA GGAATCCGAG | 600 |
AGCAATGTCT CTGAGGTTTT GGCATTCTCG CCTCCGGCTG TGAAGGGCTC | 650 |
CGGCGAGATA AAGCTTGACC TAACTTTAAG GCTCGAACCG GTGTCACGTG | 700 |
CGTATCATGT GGTACCTGTT AAGAAGAGAA GGATCGGCGT GTTTGGCACG | 750 |
TGTCAGAAGG AGAGCACGTG TAAGACTGAG CTTATGCTCT AA | 800 |
>AT3G02550.1 longest ORF length:263
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL | 50 |
MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV | 100 |
EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK | 150 |
LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE | 200 |
SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT | 250 |
CQKESTCKTE LML | 300 |
|