fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G03450 RGL2 RGA-like 2 (.1)

>AT3G03450.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AflII, AhdI, AlwI, AlwNI, ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrGI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstZ17I, Bsu36I, BtsI, ClaI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmlI, PspOMI, PstI, PvuII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SspI, StuI, SwaI, Tsp45I, Tth111I, XcmI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 598, 611, 625, 727, 846, 1504, 1602
AccIII(BspMII) T|CCGGA 61
AciI C|CGC 29, 968, 1065, 1470
AclI AA|CGTT 1396
AfeI AGC|GCT 1290
AflIII A|CPuPyGT 612
AgeI A|CCGGT 1157
AluI AG|CT 49, 132, 192, 309, 436, 592, 637, 643, 832, 910, 916, 1015, 1149, 1188, 1207, 1307
Aor51HI(Eco47III) AGC|GCT 1290
ApoI Pu|AATTPy 981, 1045, 1051
AvaI C|PyCGPuG 1305
AvaII G|G[AT]CC 69, 496, 933, 963, 1414
BamHI G|GATCC 27, 452
BanII GPuGCPy|C 1150
BfaI C|TAG 438, 548, 827, 1500
BlpI GC|TNAGC 1062
BsaAI PyAC|GTPu 663
BsaJI C|CNNGG 500, 680, 1622
BsaWI [AT]|CCGG[AT] 61, 526, 955, 1157, 1174, 1546
BsiEI CGPuPy|CG 1419
BsiHKAI G[AT]GC[AT]|C 505, 1150
BslI CCNNNNN|NNGG 1627
BsoBI C|PyCGPuG 1305
Bsp1286I G[GAT]GC[CAT]|C 505, 1150
BspEI T|CCGGA 61
BsrBI GAG|CGG 1429
BsrDI GCAATGNN| 893
BsrFI Pu|CCGGPy 1157
BsrI ACTGGN| 287
BssKI |CCNGG 320, 390, 575, 927
BstBI TT|CGAA 748, 1048, 1102
BstF5I GGATGNN| 127, 888, 1464, 1580
BstNI CC|[AT]GG 575
BstUI CG|CG 598, 611, 625, 727, 846, 1504, 1602
BstYI Pu|GATCPy 27, 333, 364, 452, 1083, 1498
BtgI C|CPuPyGG 500
BtrI CAC|GTC 859
Cac8I GCN|NGC 299, 439, 556, 897, 909
Cfr10I [AG]|CCGG[TC] 1157
DdeI C|TNAG 169, 307, 378, 517, 562, 590, 1027, 1061, 1069, 1127, 1376
DpnI GA-CH3|TC 26, 162, 275, 332, 363, 374, 451, 462, 1082, 1170, 1418, 1497
DpnII |GATC 26, 162, 275, 332, 363, 374, 451, 462, 1082, 1170, 1418, 1497
DraI TTT|AAA 1510
EcoO109I PuG|GNCCPy 70
EcoRI G|AATTC 981, 1045, 1051
Fnu4HI GC|NGC 442, 729, 1065, 1404, 1430, 1443
HaeII PuGCGC|Py 1290
HaeIII GG|CC 894
HhaI GCG|C 558, 599, 726, 845, 1289, 1503
HinP1I G|CGC 558, 599, 726, 845, 1289, 1503
HincII GTPy|PuAC 489, 511
HindIII A|AGCTT 193, 911, 1189
HinfI G|ANTC 252, 457, 474, 486, 513, 569, 581, 777, 824, 958, 987, 1116, 1261, 1317, 1346, 1457, 1487
HpaII C|CGG 60, 320, 389, 525, 927, 954, 1156, 1173, 1545
Hpy188I TCN|GA 168, 273, 306, 330, 366, 379, 454, 460, 480, 922, 961, 984, 1028, 1080, 1119, 1365, 1416, 1460, 1495
Hpy99I CG[AT]CG| 478, 687, 841, 940
HpyCH4III ACN|GT 240, 697, 998, 1200, 1230, 1330, 1448
HpyCH4IV A|CGT 662, 720, 858, 1395
HpyCH4V TG|CA 765, 888, 906, 1444
MboI |GATC 26, 162, 275, 332, 363, 374, 451, 462, 1082, 1170, 1418, 1497
MluI A|CGCGT 612
MseI T|TAA 245, 876, 902, 1134, 1203, 1212, 1509, 1583
MspA1I C[AC]G|C[GT]G 1067, 1472
MspI C|CGG 60, 320, 389, 525, 927, 954, 1156, 1173, 1545
MwoI GCNNNNN|NNGC 183, 308, 552, 819, 1023, 1532
N.BstNBI GAGTCNNNN|N 491, 782, 1351
NciI CC|[CG]GG 320, 390, 927
NheI G|CTAGC 439
NlaIII CATG| 21, 121, 298, 1033
NlaIV GGN|NCC 27, 452, 1414
NspI PuCATG|Py 299
PaeR7I C|TCGAG 1305
PmeI GTTT|AAAC 1511
PpuMI PuG|G[AT]CCPy 70
PshAI GACNN|NNGTC 939
PsiI TTA|TAA 264
PspGI |CC[AT]GG 575
PvuI CGAT|CG 1419
RsaI GT|AC 1372
RsrII CG|G[AT]CCG 497
SacI GAGCT|C 1150
Sau3AI |GATC 26, 162, 275, 332, 363, 374, 451, 462, 1082, 1170, 1418, 1497
Sau96I G|GNCC 69, 496, 933, 963, 1414
ScrFI CC|NGG 320, 390, 575, 927
SmlI C|TPyPuAG 205, 635, 674, 1305
SnaBI TAC|GTA 663
SpeI A|CTAGT 549
SphI GCATG|C 299
StyI C|C[AT][AT]GG 680
Taqƒ¿I T|CGA 160, 291, 747, 1047, 1101, 1182, 1272, 1304, 1323, 1425
TfiI G|A[AT]TC 474, 569, 581, 824, 958, 987, 1116, 1261, 1457, 1487
TliI C|TCGAG 1305
TseI G|C[AT]GC 442, 1443
Tsp509I |AATT 385, 980, 1011, 1020, 1044, 1050, 1136
TspRI NNCA[CG]TGNN| 1451
XbaI T|CTAGA 828
XhoI C|TCGAG 1305
XmnI GAANN|NNTTC 1190, 1292


Click here to view TAIR data

>AT3G03450.1 length:1644
ATGAAGAGAG GATACGGAGA AACATGGGAT CCGCCACCAA AACCACTACC 
50
AGCTTCTCGT TCCGGAGAAG GTCCTTCAAT GGCGGATAAG AAGAAGGCTG 
100
ATGATGACAA CAACAACAGC AACATGGATG ATGAGCTTCT TGCTGTTCTT 
150
GGCTACAAGG TTCGATCTTC TGAGATGGCT GAAGTAGCAC AGAAGCTTGA 
200
ACAACTTGAG ATGGTCTTGT CTAATGATGA TGTTGGTTCT ACTGTCTTAA 
250
ACGACTCTGT TCATTATAAC CCATCTGATC TCTCTAACTG GGTCGAGAGC 
300
ATGCTTTCTG AGCTGAACAA CCCGGCTTCT TCGGATCTTG ACACGACCCG 
350
AAGTTGTGTG GATAGATCCG AATACGATCT CAGAGCAATT CCGGGTCTTT 
400
CTGCGTTTCC AAAGGAAGAG GAAGTCTTTG ACGAGGAAGC TAGCAGCAAG 
450
AGGATCCGAC TCGGATCGTG GTGCGAATCG TCGGACGAGT CAACTCGGTC 
500
CGTGGTGCTC GTTGACTCTC AGGAGACCGG AGTTAGACTT GTCCACGCAC 
550
TAGTGGCGTG CGCTGAGGCG ATTCACCAGG AGAATCTCAA CTTAGCTGAC 
600
GCGCTGGTGA AACGCGTGGG AACACTCGCG GGTTCTCAAG CTGGAGCTAT 
650
GGGAAAAGTC GCTACGTATT TTGCTCAAGC CTTGGCTCGT CGTATTTACC 
700
GTGATTACAC GGCGGAGACG GACGTTTGCG CGGCGGTGAA CCCATCTTTC 
750
GAAGAGGTTT TGGAGATGCA CTTTTACGAG TCTTGCCCTT ACCTGAAGTT 
800
CGCTCATTTC ACGGCGAACC AAGCGATTCT AGAAGCTGTT ACGACGGCGC 
850
GTAGAGTTCA CGTCATTGAT TTAGGGCTTA ATCAAGGGAT GCAATGGCCT 
900
GCTTTAATGC AAGCTTTAGC TCTCCGACCC GGTGGACCTC CGTCGTTTCG 
950
TCTCACCGGA ATCGGACCAC CGCAGACGGA GAATTCAGAT TCGCTTCAAC 
1000
AGTTAGGTTG GAAATTAGCT CAATTCGCTC AGAACATGGG CGTTGAATTC 
1050
GAATTCAAAG GCTTAGCCGC TGAGAGTTTA TCGGATCTTG AACCCGAAAT 
1100
GTTCGAAACC CGACCCGAAT CTGAAACCTT AGTGGTTAAT TCGGTATTTG 
1150
AGCTCCACCG GTTATTAGCC CGATCCGGTT CAATCGAAAA GCTTCTCAAT 
1200
ACGGTTAAAG CTATTAAACC GAGTATCGTA ACGGTGGTTG AGCAAGAAGC 
1250
GAACCACAAC GGAATCGTCT TCCTCGATAG GTTCAACGAA GCGCTTCATT 
1300
ACTACTCGAG CTTGTTTGAC TCGCTCGAAG ACAGTTATAG TTTACCGAGT 
1350
CAAGACCGAG TTATGTCAGA AGTGTACTTA GGGAGACAGA TACTCAACGT 
1400
TGTTGCGGCG GAAGGGTCCG ATCGGGTCGA GCGGCACGAG ACGGCTGCAC 
1450
AGTGGAGGAT TCGGATGAAA TCCGCTGGGT TTGACCCGAT TCATCTCGGA 
1500
TCTAGCGCGT TTAAACAAGC GAGTATGCTT TTATCGCTTT ACGCTACCGG 
1550
AGATGGATAC AGAGTTGAAG AAAATGACGG ATGTTTAATG ATAGGGTGGC 
1600
AGACGCGACC ACTCATCACA ACCTCGGCGT GGAAACTCGC CTGA
1650

>AT3G03450.1 longest ORF length:547
MKRGYGETWD PPPKPLPASR SGEGPSMADK KKADDDNNNS NMDDELLAVL 
50
GYKVRSSEMA EVAQKLEQLE MVLSNDDVGS TVLNDSVHYN PSDLSNWVES 
100
MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK 
150
RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD 
200
ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF 
250
EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP 
300
ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF 
350
EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN 
400
TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS 
450
QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG 
500
SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA
550