fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G03450 RGL2 RGA-like 2 (.1)

>AT3G03450.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SalI, SmaI
Name Recognition sequence Cut positions
BamHI G|GATCC 27, 452
EcoRI G|AATTC 981, 1045, 1051
HindIII A|AGCTT 193, 911, 1189
NheI G|CTAGC 439
SacI GAGCT|C 1150
SpeI A|CTAGT 549
StyI C|C[AT][AT]GG 680
XbaI T|CTAGA 828
XhoI C|TCGAG 1305


Click here to view TAIR data

>AT3G03450.1 length:1644
ATGAAGAGAG GATACGGAGA AACATGGGAT CCGCCACCAA AACCACTACC 
50
AGCTTCTCGT TCCGGAGAAG GTCCTTCAAT GGCGGATAAG AAGAAGGCTG 
100
ATGATGACAA CAACAACAGC AACATGGATG ATGAGCTTCT TGCTGTTCTT 
150
GGCTACAAGG TTCGATCTTC TGAGATGGCT GAAGTAGCAC AGAAGCTTGA 
200
ACAACTTGAG ATGGTCTTGT CTAATGATGA TGTTGGTTCT ACTGTCTTAA 
250
ACGACTCTGT TCATTATAAC CCATCTGATC TCTCTAACTG GGTCGAGAGC 
300
ATGCTTTCTG AGCTGAACAA CCCGGCTTCT TCGGATCTTG ACACGACCCG 
350
AAGTTGTGTG GATAGATCCG AATACGATCT CAGAGCAATT CCGGGTCTTT 
400
CTGCGTTTCC AAAGGAAGAG GAAGTCTTTG ACGAGGAAGC TAGCAGCAAG 
450
AGGATCCGAC TCGGATCGTG GTGCGAATCG TCGGACGAGT CAACTCGGTC 
500
CGTGGTGCTC GTTGACTCTC AGGAGACCGG AGTTAGACTT GTCCACGCAC 
550
TAGTGGCGTG CGCTGAGGCG ATTCACCAGG AGAATCTCAA CTTAGCTGAC 
600
GCGCTGGTGA AACGCGTGGG AACACTCGCG GGTTCTCAAG CTGGAGCTAT 
650
GGGAAAAGTC GCTACGTATT TTGCTCAAGC CTTGGCTCGT CGTATTTACC 
700
GTGATTACAC GGCGGAGACG GACGTTTGCG CGGCGGTGAA CCCATCTTTC 
750
GAAGAGGTTT TGGAGATGCA CTTTTACGAG TCTTGCCCTT ACCTGAAGTT 
800
CGCTCATTTC ACGGCGAACC AAGCGATTCT AGAAGCTGTT ACGACGGCGC 
850
GTAGAGTTCA CGTCATTGAT TTAGGGCTTA ATCAAGGGAT GCAATGGCCT 
900
GCTTTAATGC AAGCTTTAGC TCTCCGACCC GGTGGACCTC CGTCGTTTCG 
950
TCTCACCGGA ATCGGACCAC CGCAGACGGA GAATTCAGAT TCGCTTCAAC 
1000
AGTTAGGTTG GAAATTAGCT CAATTCGCTC AGAACATGGG CGTTGAATTC 
1050
GAATTCAAAG GCTTAGCCGC TGAGAGTTTA TCGGATCTTG AACCCGAAAT 
1100
GTTCGAAACC CGACCCGAAT CTGAAACCTT AGTGGTTAAT TCGGTATTTG 
1150
AGCTCCACCG GTTATTAGCC CGATCCGGTT CAATCGAAAA GCTTCTCAAT 
1200
ACGGTTAAAG CTATTAAACC GAGTATCGTA ACGGTGGTTG AGCAAGAAGC 
1250
GAACCACAAC GGAATCGTCT TCCTCGATAG GTTCAACGAA GCGCTTCATT 
1300
ACTACTCGAG CTTGTTTGAC TCGCTCGAAG ACAGTTATAG TTTACCGAGT 
1350
CAAGACCGAG TTATGTCAGA AGTGTACTTA GGGAGACAGA TACTCAACGT 
1400
TGTTGCGGCG GAAGGGTCCG ATCGGGTCGA GCGGCACGAG ACGGCTGCAC 
1450
AGTGGAGGAT TCGGATGAAA TCCGCTGGGT TTGACCCGAT TCATCTCGGA 
1500
TCTAGCGCGT TTAAACAAGC GAGTATGCTT TTATCGCTTT ACGCTACCGG 
1550
AGATGGATAC AGAGTTGAAG AAAATGACGG ATGTTTAATG ATAGGGTGGC 
1600
AGACGCGACC ACTCATCACA ACCTCGGCGT GGAAACTCGC CTGA
1650

>AT3G03450.1 longest ORF length:547
MKRGYGETWD PPPKPLPASR SGEGPSMADK KKADDDNNNS NMDDELLAVL 
50
GYKVRSSEMA EVAQKLEQLE MVLSNDDVGS TVLNDSVHYN PSDLSNWVES 
100
MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK 
150
RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD 
200
ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF 
250
EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP 
300
ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF 
350
EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN 
400
TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS 
450
QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG 
500
SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA
550